Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A16
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118           30   0.60 
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583...    29   1.1  
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251           28   2.4  
08_02_0222 + 14446967-14448310                                         27   4.2  
01_06_1823 - 40140405-40140965,40141305-40141803,40143830-40143960     27   5.6  
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232...    26   7.4  
03_02_0751 + 10919768-10920282,10920518-10920710,10920796-109209...    26   9.8  

>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
          Length = 361

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 204 EPCEEPSEFLPNGCPADFHVHHLLPHETNCS-RFYYCVFGENVERECA 344
           E  E P ++   GCP  F  +  + HE  CS R Y C +  +   ECA
Sbjct: 152 ESLELPCKYCSLGCPEIFPYYSKIKHEAQCSFRPYNCPYAGS---ECA 196


>02_02_0521 -
           11156594-11156956,11157097-11157483,11158327-11158383,
           11159671-11159970
          Length = 368

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 204 EPCEEPSEFLPNGCPADFHVHHLLPHETNCS-RFYYCVF 317
           E  E P ++   GCP  F  +  L HE+ C+ R Y C +
Sbjct: 158 ESLELPCKYYSLGCPEIFPYYSKLKHESQCNFRPYNCPY 196


>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
          Length = 347

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 204 EPCEEPSEFLPNGCPADFHVHHLLPHETNCS-RFYYCVFGENVERECA 344
           E  E P ++   GCP  F  +  + HE  C  R Y C +  +   ECA
Sbjct: 138 ESLELPCKYCSLGCPEIFPYYSKIKHEAQCMFRPYNCPYAGS---ECA 182


>08_02_0222 + 14446967-14448310
          Length = 447

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 347 RCAFTFDVLSEYAIVEPTAVG 285
           RC  T  V+ EYA+V+P A+G
Sbjct: 128 RCGSTGWVMHEYAVVKPAALG 148


>01_06_1823 - 40140405-40140965,40141305-40141803,40143830-40143960
          Length = 396

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 204 EPCEEPSEFLPNGCPADFH--VHHLLPHETNCSRFYY-CVFGENVERECAP 347
           E C +P +FLP+     FH  V  L          Y+ C+ G+ +  E  P
Sbjct: 92  EKCWQPQDFLPDPASDGFHDEVKELRERAKEIPDDYFVCLVGDMITEEALP 142


>02_02_0658 +
           12720873-12720906,12721201-12721664,12723069-12723227,
           12723308-12723424,12723570-12723721,12724594-12724685,
           12724787-12725464,12725551-12725803,12725804-12725888,
           12725969-12726037,12726489-12726668,12726989-12726994,
           12727526-12727624
          Length = 795

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 208 LVKNLPNFYPTVVQLIFTYTTYSHMRPTAVGSTIAYSERTSNV 336
           ++KN+PN Y  +  +      YS MR T V   +     TSN+
Sbjct: 613 MIKNIPNKYDILELIGVMLCYYSVMRSTFVAHILLNFRYTSNM 655


>03_02_0751 +
           10919768-10920282,10920518-10920710,10920796-10920986,
           10921148-10921306,10921390-10921720
          Length = 462

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 225 EFLPNGCPADFHVHHLLPHE 284
           +FL   C  ++HV H L HE
Sbjct: 234 KFLDYNCSVEYHVTHFLVHE 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,580,028
Number of Sequences: 37544
Number of extensions: 75990
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)