Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A16
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 29 0.93
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 29 0.93
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 27 5.0
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 27 5.0
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 27 5.0
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 27 5.0
Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical pr... 26 6.6
U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical pr... 26 8.7
U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein. 26 8.7
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 26 8.7
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 219 PSEFLPNGCPADFHVHHLLPHETNCSRFYYC 311
P +F +GCP +FH HE C YC
Sbjct: 146 PCKFSTSGCPLNFHHADKTEHEELCEFRPYC 176
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 219 PSEFLPNGCPADFHVHHLLPHETNCSRFYYC 311
P +F +GCP +FH HE C YC
Sbjct: 212 PCKFSTSGCPLNFHHADKTEHEELCEFRPYC 242
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 288 NCSRFYYCVFGENVERECAPG 350
NC FY CV+G V C G
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSG 1277
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 273 LPHETNCSRFYYCV-FGENVERECAP 347
+PH NCS F C+ E E +C P
Sbjct: 1127 IPHLNNCSHFATCIDLEEGYECKCKP 1152
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 273 LPHETNCSRFYYCV-FGENVERECAP 347
+PH NCS F C+ E E +C P
Sbjct: 1127 IPHLNNCSHFATCIDLEEGYECKCKP 1152
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 276 PHETNCSRFYYCVFGENVERECAPG 350
P NC FY C G +R C G
Sbjct: 167 PDVYNCKNFYQCASGLWTQRSCGEG 191
>Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical
protein R01E6.3b protein.
Length = 235
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 234 PNGCPADFHVHHLLP 278
P P DFH+ HLLP
Sbjct: 154 PIAMPKDFHIEHLLP 168
>Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical
protein R01E6.3a protein.
Length = 280
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 234 PNGCPADFHVHHLLP 278
P P DFH+ HLLP
Sbjct: 199 PIAMPKDFHIEHLLP 213
>U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical
protein W01C8.5b protein.
Length = 323
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 216 EPSEFLP-NGCPADFHVHHLLPHETNCSRFYY 308
EP +L +G P D H P+ET S YY
Sbjct: 224 EPDTYLECDGWPEDVHSFAFTPNETTPSVLYY 255
>U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical
protein W01C8.5a protein.
Length = 511
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 216 EPSEFLP-NGCPADFHVHHLLPHETNCSRFYY 308
EP +L +G P D H P+ET S YY
Sbjct: 412 EPDTYLECDGWPEDVHSFAFTPNETTPSVLYY 443
>AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein.
Length = 511
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 216 EPSEFLP-NGCPADFHVHHLLPHETNCSRFYY 308
EP +L +G P D H P+ET S YY
Sbjct: 412 EPDTYLECDGWPEDVHSFAFTPNETTPSVLYY 443
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 229 FYPTVVQLIFTYTTYSHMRPTAVGSTIAYSERTSNVNAHLET 354
+Y + + F Y H+ T V T A+ N HLET
Sbjct: 486 WYRQIFEDTFVYDKMGHLVHTKVYRTAAWHRPDEKENMHLET 527
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,934,600
Number of Sequences: 27780
Number of extensions: 72535
Number of successful extensions: 270
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -