Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A15
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0196 + 26293889-26294122,26294317-26294375,26294454-262945...    28   5.4  
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524...    27   7.2  

>05_06_0196 +
           26293889-26294122,26294317-26294375,26294454-26294554,
           26294638-26294717,26294856-26294906,26295225-26295299,
           26295386-26295463,26295700-26295756,26296226-26296296,
           26296395-26296494,26296574-26296678,26296763-26296825,
           26296940-26297062,26297129-26297193,26297352-26297358
          Length = 422

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +2

Query: 242 DVDYVPDKKECNKYWRCVNGEGMQFSCQ---PGTIFNI 346
           +VD +  K ECN+  R V+GEG+Q +      GT+ N+
Sbjct: 193 EVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINV 230


>06_02_0008 -
           10552066-10552116,10552224-10552323,10552394-10552449,
           10553950-10557180
          Length = 1145

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -3

Query: 352 QFDVEYCSGLTRELHAFAVDASPILITFLLIRHIIYVRITYICVFNFIFRRWFFYLLWSY 173
           +F++  CS  T  + +       +L++  L RH I  +  ++CV   +F   F Y   S 
Sbjct: 329 RFNIFTCSNATSFVASLVTII--LLLSTELSRHGIRTQALFVCVIAELFGLIFAYAAGSC 386

Query: 172 KDVIT 158
           +DV T
Sbjct: 387 RDVAT 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,063,536
Number of Sequences: 37544
Number of extensions: 170380
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)