Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A11
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 30 0.19
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 27 2.4
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 3.1
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 26 4.1
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 25 5.5
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.5
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 7.2
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 7.2
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 9.5
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 9.5
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 30.3 bits (65), Expect = 0.19
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 271 TFIRYSTKFMVKRRLRNTPWPSSRKEPRTPRSMIYEA 381
T + Y +++ + + RN W + + R PRS IY+A
Sbjct: 283 TILDYKARYL-RNKTRNMKWHTIHERQRNPRSAIYQA 318
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 524 DAGYARPSEEIGQVFDAFTGVDGFFID 444
D YA+ SE+ QVF + G DG ID
Sbjct: 45 DPKYAKLSEQDVQVFKSIIGKDGSLID 71
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 15 KANYTAVIERGHGAPELVVRMCVTPNVALAKCRAMSVFAFSRDIRPIMDCVQEPTED 185
K YT ++ER E V N AK R + ++++ RP + V+ T+D
Sbjct: 97 KVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETRPTVSEVRVSTKD 153
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 4.1
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +1
Query: 304 KRRLRNTPWPSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASK 483
KR P S+KE +T +S + K T S T +T ++K TP+ ++
Sbjct: 198 KRENAKVPKDVSKKEAKTTKS---KEKATKKTSSSVPKQSTGENTKKAVKL-ETPLTSTP 253
Query: 484 TWPISSEGLAYPASINQKI 540
P SE PA++N+ I
Sbjct: 254 PIPPLSEPKHSPATVNEHI 272
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 171 EPTEDDCFKSVQDN 212
EP +DCFK+V +N
Sbjct: 92 EPVREDCFKTVNEN 105
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 419 TAERPEGVMAGSFAS*IIDLGVRGSFLDDGHGVFRSLLFTINFVE 285
T+ RP + G + DLG++ + HG+ +L +N+VE
Sbjct: 948 TSNRPNSTLFGKGR--VKDLGIQSVLIWLSHGLLTLILHELNWVE 990
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 77 HSDDELRSAVSSFNDGSVVSLVQVV 3
HS D RS + DGSVV L V+
Sbjct: 365 HSQDNNRSNIELLKDGSVVRLRHVM 389
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 541 LFSGLSTPGMQDPPKKSAKFLTHSP 467
L +GL++P + PP + L HSP
Sbjct: 313 LATGLNSPSVSKPPSSATGPLYHSP 337
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +1
Query: 289 TKFMVKRRLRNTPWPSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTP 468
+ ++ R + P+ P P S YE P + S + I PS+
Sbjct: 356 SSYVSSRDPHSMPYYRREPIPLRPSSRFYEYTRPTYGRTDTSCSAPGAFCSTQINSPSSY 415
Query: 469 VNASKTWPIS 498
+N SK P S
Sbjct: 416 INYSKCAPSS 425
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 331 PSSRKEPRTPRSMIYEAKDPAITPS 405
PSS+ R+P+ M E +PA +P+
Sbjct: 231 PSSQNTARSPKRMATEPIEPASSPA 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,093
Number of Sequences: 5004
Number of extensions: 44101
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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