Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A11
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 31 0.45
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 29 2.4
07_03_0216 + 15286968-15286970,15287068-15287213,15288333-152883... 28 4.2
03_05_1016 + 29726949-29727503,29728863-29729504 27 7.3
02_02_0712 + 13200174-13200761,13201966-13202616 27 7.3
01_06_1740 - 39575614-39576981 27 7.3
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 27 7.3
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 27 9.7
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 9.7
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 31.5 bits (68), Expect = 0.45
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +3
Query: 282 VFHEVYGKKKTPKYAVAVV---KKGTSYTKIDDLRGKRSCHNSFGTFS-GLHAPLYYLIN 449
V ++YG K+ K A+ +V +G ++T R R + F+ G + L + IN
Sbjct: 303 VADQMYGPKEDRKLAIVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGIN 362
Query: 450 KKAINTGECVKNLADFFGGSCIPGVD 527
+ +++ V+ ADFF G GV+
Sbjct: 363 QTSLSASNSVEQTADFFRGDNKEGVE 388
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 307 RRLRNTPWPSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASKT 486
RR N PW +K P+ R +Y +P+ S L+ IKK + K
Sbjct: 67 RRGHNLPWKLKQKNPKEARRRVYLCPEPSCVHHDPSRALGDLT---GIKKHYCRKHGEKK 123
Query: 487 W 489
W
Sbjct: 124 W 124
>07_03_0216 +
15286968-15286970,15287068-15287213,15288333-15288335,
15288514-15288697,15289772-15289824,15290118-15290206,
15291270-15291506,15293494-15293687,15293774-15293834,
15293905-15294022,15294093-15294174,15295212-15295337,
15295435-15295530,15295945-15296099,15296706-15296802,
15296926-15297003,15297085-15297192
Length = 609
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 509 RPSEEIGQVFDAFTGVDGFFIDKVVE 432
+P E + V DA G GFF+DKV++
Sbjct: 283 KPLEGLHIVVDAGNGAGGFFVDKVLK 308
>03_05_1016 + 29726949-29727503,29728863-29729504
Length = 398
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 427 HLSTTLSIKKPSTPVNASKTWPISSEGLAYPASINQ 534
+ T L+I+ P + N S TW S G A+PA+ +
Sbjct: 310 YFPTMLTIEAPQSLANRSITWVDWSRGGAHPATFGR 345
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 427 HLSTTLSIKKPSTPVNASKTWPISSEGLAYPA 522
+L T L I+ PS N S TW S G +PA
Sbjct: 322 YLPTFLGIRHPSRVTNRSVTWVDWSHGGPHPA 353
>01_06_1740 - 39575614-39576981
Length = 455
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 322 TPWPSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPST 465
TPW + P P ++ E ++P + P G L T SI++ ST
Sbjct: 121 TPWSAPAGHPAPPAAVPEEPQEPRLGPPGLKPA-KILDTHKSIERTST 167
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 331 PSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASKTWPISSEGL 510
P S R P +I + + + +P+GR + L S PS+ V+ + P SSE L
Sbjct: 306 PPSLYPQRVPPHLIVQQQQSSPSPTGRGSPVARLRAGHSPATPSSDVSMEDS-PSSSELL 364
Query: 511 A 513
A
Sbjct: 365 A 365
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 325 PWPSSRKEPRTPRSMIYEAKDPAITPS 405
PWP S PRTP + + P + P+
Sbjct: 68 PWPPSPPPPRTPSAASTSSCRPTVAPA 94
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 334 SSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASKTWPIS 498
S++++ TPRS+ E K P R+ VF HL+ + S + SK+ IS
Sbjct: 364 STQQKSATPRSLAQEDKSPKENGDTRTNVF-HLTLISRSQSMSANHSMSKSMSIS 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,798
Number of Sequences: 37544
Number of extensions: 290421
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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