Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A10
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    31   0.11 
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    28   0.76 
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    28   1.00 
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    28   1.00 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   4.0  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    26   4.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   4.0  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   5.3  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.0  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   7.0  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   7.0  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    25   9.3  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   9.3  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    25   9.3  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 232 VVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFSADINNAFNYI 366
           ++DYA K     +   V  +  DDDL++IS  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 358 NYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPT 465
           NY++  +Q K +  SK DE S +LLN    +   PT
Sbjct: 139 NYVRFFIQPKLNNTSKLDEISDSLLNAFSKLKEEPT 174


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 202 LQQIGTVVGGVVDYAKKKSYDDML--RQVQDSTTDDDLLRISEEMFSADINNAFNYIQ 369
           L+++G+   GVV  A++    D++  +Q+   T  DD+  I +E+F     N+ N IQ
Sbjct: 12  LRKLGSGSFGVVWKARENVSGDIIAIKQIDLETGIDDITDIEQEVFMLSNCNSSNVIQ 69


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 265 DMLRQVQDSTTDDDLLRISEEMFSADINNAFNYIQVSLQG 384
           D+ RQV       DL+R+ +  F+ D  N F++ + S  G
Sbjct: 349 DLGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAPG 388


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 247 KKKSYDDMLRQVQDSTTDDDLLRISEEMFSADINNA 354
           KK+S +D L Q+     DD++LR+ E+M  A + +A
Sbjct: 173 KKRSNEDNLEQM----ADDEVLRLREQMRLAALRDA 204


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 298 DDDLLRISEEMFSADINNAFNYIQVSLQGKTSPMSKNDEASSNL 429
           ++DL+RIS + +S+ + N ++ I++ L        +N E  S++
Sbjct: 162 EEDLVRISSDKYSSALQNKYHLIKI-LTSLIEESKRNAEKFSHV 204


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 283 QDSTTDDDLLRISEEMFSADI 345
           QD   DDD+  + EE+FS D+
Sbjct: 34  QDDEPDDDIDALIEELFSEDV 54


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 52  MRIILILLVSLGLCHADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVV 225
           M + LI+ VS GL   + ++  +   FN +LP +I NS  G + + + N  + IGT++
Sbjct: 73  MVVGLIIRVSPGLIIQNMVSFHSTYFFNVLLPPIILNS--GYELHQS-NFFRNIGTIL 127


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 45  SQNENNFNITGFSRAMSCR*HSSSGWSNI*QY 140
           SQN +++N   F R+   R  S S  SNI +Y
Sbjct: 198 SQNNSHYNDKSFHRSRYSRARSRSPGSNISEY 229


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
 Frame = +1

Query: 175  QQGNTAQNTLQQIGTVVG---GVVDYAKKKSYDDMLRQV---QDSTTDDDLLRISEEMFS 336
            Q+G +    L+  GT +G   G  D     + DD L ++   +D+    DL         
Sbjct: 3899 QEGKSNSGELES-GTGLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELE 3957

Query: 337  ADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENV 450
            +D+N       VS    +    +N +    + ++PE++
Sbjct: 3958 SDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDL 3995


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 337 ADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSG 459
           +DI  A NY   S+  +T     ++    +  +V +NVW G
Sbjct: 307 SDIRGANNYGWTSILVRTGIFQGDNSPKYSAKHVSDNVWEG 347


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 364 IQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFD 492
           + +S    TSP+S +  AS   LN+P  +    +  PF    D
Sbjct: 241 LDLSNSNPTSPVSPSSMASRRGLNIPPTLKQAVSETPFSTFSD 283


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 40  FNPKMRIILILLVSLGLCHADDIAQAAGQIFNSILPNLISNSVTG-QQGNTAQNTLQQIG 216
           F P++  + I +V+ G+CH D     +G+    + P ++ +   G  +    Q T  Q+G
Sbjct: 33  FPPRVHEVRIKIVNSGVCHTDAYT-LSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVG 91

Query: 217 TVV 225
             V
Sbjct: 92  DPV 94


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 220 VVGGVVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFS 336
           VV   V+YAK+ S+D +L        +D  L  S E F+
Sbjct: 418 VVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFT 456


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 157 SNSVTGQQGNTAQNTLQQIGTVVGGVVDYAKKKSYDDMLRQVQDSTTD 300
           ++SVT ++     NTLQQ   V G +   A+     +++ +V++S  D
Sbjct: 217 ADSVTKEEHQGGSNTLQQTKDVGGAIAPAAEVGK--EVINEVENSKDD 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,212
Number of Sequences: 5004
Number of extensions: 36662
Number of successful extensions: 101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)