Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A10
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 31 0.76
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 29 1.8
04_04_0259 - 23993673-23994139,23994505-23994670 29 3.1
05_04_0344 + 20442041-20442374,20443115-20443210,20444512-204446... 28 4.1
08_02_1292 + 25943074-25943643 28 5.4
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 5.4
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 27 9.4
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738... 27 9.4
06_03_0449 + 20907491-20910146,20910313-20910782 27 9.4
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 343 INNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFV 480
+N A+N +Q +Q + P D SN++N + T+R FV
Sbjct: 455 VNTAYNLLQYEVQSRVFPAILKDATKSNVVNYLWQINPSLTLRGFV 500
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 271 ACHRSFSF*HNQRRHRQPYRFVAMYSEPYSLAVQSQN*ILNLEGYC*IFDQP 116
AC + + NQ RH Q + Y++ Y + ++ Q + + G+ FD P
Sbjct: 371 ACEMAVVWIQNQLRHNQTRELILQYADQYVVKLEQQGQTVCISGFM-AFDVP 421
>04_04_0259 - 23993673-23994139,23994505-23994670
Length = 210
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 61 ILILLVSLGLCHADDIAQAAGQIFNSILPNLI 156
+L+LLV LG CH A AAG +++ L+
Sbjct: 15 LLLLLVVLGACHVTPAAAAAGARLSALAKALV 46
>05_04_0344 +
20442041-20442374,20443115-20443210,20444512-20444633,
20444781-20445029,20445300-20445549,20446036-20446262
Length = 425
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 94 HADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVVGG 231
H + A AA I ++ N + S QQ + TLQQI +GG
Sbjct: 165 HGVNYASAAAGILDNTGQNFVGRSPFNQQIKNFEATLQQISGKLGG 210
>08_02_1292 + 25943074-25943643
Length = 189
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 286 DSTTDDDLLRISEEMFSADINNAFNYIQVSLQGK 387
D+TTD+D++ ++ + S DI I + QG+
Sbjct: 156 DTTTDEDVMAAADRLLSMDIEEVAALIAIVQQGE 189
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 286 DSTTDDDLLRISEEMFSADINNAFNYIQ 369
D T D L +S EM+ D NN +Y+Q
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQ 700
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.1 bits (57), Expect = 9.4
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 100 DDIAQAAGQIFNSILPNLISNSVTGQQGNTA--QNTLQQIGTVVG-GVVDYAKKKSYDDM 270
D+I +A +FN +L L +T +G T +NTL + + VG V++ +K D+
Sbjct: 1200 DEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDL 1259
Query: 271 LRQVQDSTTDDDLLRISEEM 330
+DS+ + EEM
Sbjct: 1260 DYDEKDSSYSRIKSLVVEEM 1279
>10_06_0083 +
10471648-10471806,10473261-10473343,10473384-10473810,
10475806-10475932,10476329-10476471,10476687-10476749,
10476833-10476898,10477047-10477085
Length = 368
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 45 SQNENNFNITGFSRAMSCR*HSSSGWSNI*QYPSKFNI*FCDWTA 179
S+ F FSR+MSC HS + +S+ + +K ++ + TA
Sbjct: 280 SRQHRGFQTKSFSRSMSCDSHSKASFSSSSRAHTKVDLSKLEMTA 324
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 27.1 bits (57), Expect = 9.4
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Frame = +1
Query: 157 SNSVTGQQGNTAQNT------LQQIGTVVGGVVDYAKKKSYDDMLRQVQDSTTDDDLLRI 318
SN+ TG G T + GTV V D A D Q+ + L R
Sbjct: 68 SNATTGGGGGAGVVTELSLHDMNLTGTVPTAVCDLASLTRLDLSNNQLTGAFPAAALSRC 127
Query: 319 SEEMFSADINNAFNYIQVSLQGKTSPMSKNDEASSNLLN--VPENVWSGPTIR 471
+ F NNA + G+ SP ++ SSN L+ VP V + P +R
Sbjct: 128 ARLRFLDLANNALDGALPQHVGRLSPAMEHLNLSSNRLSGAVPPEVAALPALR 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,419,758
Number of Sequences: 37544
Number of extensions: 222567
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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