Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A09
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.45 
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    27   1.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.5  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    24   9.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    24   9.6  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    24   9.6  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +3

Query: 84  PSTPSAAAANIARRHDRKLHKKKITTQQRPI------RTVENVTVEWS 209
           P   S+A A I   HD+  H   + TQQ PI      R V+N+  E S
Sbjct: 665 PQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVS 712


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 315 PVQLLWFFFGRHQVVASSSVSEARHQYLLPPG 220
           P+   +  +G+H ++   SV    HQ LLP G
Sbjct: 27  PLNFGYLSWGQHSILEQDSVQLISHQSLLPAG 58


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 271 SFILCERSQTPVPLASGNFIPDHSTVTFSTVRI 173
           ++IL   S + V L    FIP   T TFS + I
Sbjct: 228 AYILNPTSDSDVDLIRQYFIPKEGTYTFSNMHI 260


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 246 WLRSQRMKLPPGVGQRKTKAI 308
           W++S    LPP V Q KT+ I
Sbjct: 24  WIQSSLRALPPDVKQNKTEPI 44


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 196 VTFSTVRIGLCCVVIFFLCSFLS 128
           + F  V IG+   ++F LCS+LS
Sbjct: 200 IKFFGVNIGIGRAILFNLCSYLS 222


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 261 RMKLPPGVGQRKTKAIEQELRIMNIDVAP 347
           R + PP   +R  ++IEQEL  +  DV P
Sbjct: 97  RSRSPPPSRERSVRSIEQELEQLR-DVTP 124


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +3

Query: 123 RHDRKLHKKKITTQQRPIRTVENV----TVEWSGIKFPEARGTGVWLRSQRMKLPPGVGQ 290
           R++RK H K   T  +P+   E+      +E S  + P++R    + R     +     Q
Sbjct: 240 RNERKFHAKTRKTPSKPVTNNEDEDIKRAIELSLKEMPQSREPPSYERPSEANVVISQDQ 299

Query: 291 RKTKAIEQELR 323
             T+  ++EL+
Sbjct: 300 HLTEDEDEELK 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,316
Number of Sequences: 5004
Number of extensions: 32270
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)