Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A09
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0025 + 10719385-10719424,10719885-10720063 31 0.44
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100... 30 1.0
02_04_0311 + 21936812-21937861 30 1.0
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 28 3.1
12_01_0118 - 898490-899104 28 4.1
11_06_0034 - 19448316-19449767 28 4.1
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537... 28 4.1
05_07_0019 - 27090791-27090945,27091775-27091963,27092635-270926... 27 7.2
06_02_0150 + 12295592-12295773,12295874-12295976,12296061-122963... 27 9.5
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 27 9.5
>06_02_0025 + 10719385-10719424,10719885-10720063
Length = 72
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 108 ANIARRHDRKLHKKKITTQQRPIRTVENVTVEWSGI 215
AN+ R+ R+LH KI Q++P + V ++V++ I
Sbjct: 25 ANLIRKQQRRLHSDKIRLQRQPRQHVHALSVQYEWI 60
>03_01_0130 -
1007433-1007712,1007739-1007803,1007804-1008001,
1008103-1008273,1008405-1008553,1008780-1008927,
1009015-1009083,1009168-1009416,1009516-1009710,
1009869-1009985,1010205-1011329
Length = 921
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 84 PSTPSAAAANIARRHDRKLHKKKITT----QQRPIRTVENVTVEWSGIKFPEARGTGVW 248
PS AA N R +H+ T Q + RTV+ + WSG+ G GVW
Sbjct: 28 PSISGEAAINREERRTCDVHEAHATRSSIDQGKTARTVDAKSSNWSGMDVVWPHGHGVW 86
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 322 RNSCSIALVFLWPTPGGSFILCERSQTPVPLASGNFIPDHSTVTFSTVRIGLCCVVIF 149
R C L+ L GG F + +P P +G + + T TV IG+ V++F
Sbjct: 4 RARCLCLLLLLLLVVGGGFHVANAQASPAPPQTGTRAVNRAVSTVITVVIGVFFVLVF 61
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 126 DAWRY*PQPPTVYSDLQCCLQLYSQLD 46
D W+Y P PPT+ ++ L ++LD
Sbjct: 23 DRWQYQPSPPTIQCSIENALTRITKLD 49
>12_01_0118 - 898490-899104
Length = 204
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 204 WSGIKFPEARGTGVWLRSQRMKLPPG 281
W G+ + E+ GVWLRS+ L PG
Sbjct: 3 WDGMGWNESTFMGVWLRSEWDGLVPG 28
>11_06_0034 - 19448316-19449767
Length = 483
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 93 PSAAAANIARRHDRKLHKKKITTQQRPIR 179
PSAAAA++ RRH + H++ + +R
Sbjct: 372 PSAAAAHLRRRHAEREHERYAAARNAAVR 400
>02_01_0721 -
5373449-5373603,5373912-5373981,5374473-5374620,
5374755-5374870,5374955-5375033,5375163-5375233,
5376201-5376344,5376439-5376592,5376906-5376941,
5377145-5377226,5377315-5377408,5377993-5378062,
5378177-5378274,5378745-5378827,5379335-5379428,
5379533-5380036
Length = 665
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 265 ILCERSQTPVPLASGNFIPDHSTVTFSTVRIGL 167
I+ + S+TP L G PDH +T V G+
Sbjct: 402 IMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGI 434
>05_07_0019 -
27090791-27090945,27091775-27091963,27092635-27092694,
27092793-27092981,27093116-27093209,27093319-27093428,
27093657-27093969
Length = 369
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 213 IKFPEARGT-GVWLRSQRMKLPPGVGQRKTKAIEQELRIMNIDVAPTPTEAI 365
+++P R T +W R+ LPP + RK K + L + ++ + T+AI
Sbjct: 70 LRYPLKRNTVPIWAVPVRLHLPPFLDFRKKKTVPDRL-LFSVLITAVLTDAI 120
>06_02_0150 +
12295592-12295773,12295874-12295976,12296061-12296349,
12296460-12296611
Length = 241
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 210 GIKFPEARGTGVWLRSQRMKLPPG 281
G+ PEA G G W+++Q PG
Sbjct: 97 GVLVPEALGLGNWVQAQEWAAEPG 120
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 202 NGPV*SSRRQEVLVSGFAHRG*SYHLVSAKEKPKQLNRSYAS*IL 336
N PV S+RQ VLV+ +H VS+ KP L + Y I+
Sbjct: 1563 NMPVSESKRQRVLVASSIIYSEVWHAVSSDRKP--LRKKYVGLIM 1605
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,621,220
Number of Sequences: 37544
Number of extensions: 230000
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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