Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A08
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    27   4.8  
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723...    27   8.3  
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43...    27   8.3  
04_04_0652 + 26957258-26957354,26957702-26958015                       27   8.3  

>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 44  FLILCCSLSLTINFCDFVNGSVGGLLSKLRDPLP 145
           FL +C  + L +    F+   V GLL+K   PLP
Sbjct: 79  FLTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLP 112


>09_05_0014 -
           20071514-20071690,20071779-20071894,20072177-20072315,
           20072649-20072672,20072879-20072989,20073089-20073239,
           20073357-20073478,20074287-20074556
          Length = 369

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 89  DFVNGSVGGLLSKLRDPLPTVDQA 160
           DF N  + G LS+L + +P VD+A
Sbjct: 100 DFANEGMEGFLSELTNAIPGVDEA 123


>06_01_0047 -
           429838-429960,430413-430508,430589-430596,431088-431141,
           431226-431274,431368-431466,431560-431639,431926-431989,
           432082-432255,432342-432965,433046-433189,433262-433372,
           433442-433498,433664-433798
          Length = 605

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 8   VDRTSQFIKMKVFLILCCSLSLTINFCDFVN-GSVGGLLSKLR 133
           +D  S+  K+K F    C L LT+N+ DF+N GS   LL   R
Sbjct: 337 MDHISKLEKLKTFG--GCLLHLTVNYLDFLNFGSQKVLLDTPR 377


>04_04_0652 + 26957258-26957354,26957702-26958015
          Length = 136

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 329 GGCATGFMRTADGRCKPTFG 388
           GG   G  R+ +G C+P FG
Sbjct: 81  GGRGLGIQRSGNGSCRPAFG 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,884
Number of Sequences: 37544
Number of extensions: 179791
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)