Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A08
(427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p... 29 1.8
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor... 29 1.8
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ... 29 1.8
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase... 29 1.8
DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein. 28 3.2
DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-couple... 28 3.2
AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical... 28 3.2
AF026211-1|AAB71293.2| 600|Caenorhabditis elegans Sodium:neurot... 28 3.2
Z12017-2|CAA78048.1| 455|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z69383-4|CAA93411.2| 326|Caenorhabditis elegans Hypothetical pr... 27 5.6
AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical... 27 5.6
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 27 7.4
U67953-5|AAL13330.2| 287|Caenorhabditis elegans Male abnormal p... 27 7.4
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 27 7.4
AY742796-1|AAW59416.1| 287|Caenorhabditis elegans MAB-7 protein. 27 7.4
>Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical
protein F27D4.5 protein.
Length = 366
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 110 GGLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRDQTV 217
G LLS +RDP P + +I++R +SED D T+
Sbjct: 197 GLLLSCIRDPNPCIFFEPKILYRLASEDVPTGDYTI 232
>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 41 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 208
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 737 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 796
Query: 209 QTVTSAT 229
+ V A+
Sbjct: 797 RVVQIAS 803
>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
transporting ATPase protein.
Length = 1238
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 41 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 208
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 737 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 796
Query: 209 QTVTSAT 229
+ V A+
Sbjct: 797 RVVQIAS 803
>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 41 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 208
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 737 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 796
Query: 209 QTVTSAT 229
+ V A+
Sbjct: 797 RVVQIAS 803
>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
protein.
Length = 1116
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 41 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 208
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 615 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 674
Query: 209 QTVTSAT 229
+ V A+
Sbjct: 675 RVVQIAS 681
>DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein.
Length = 600
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 266 LQFEWLFLKPQNELLMSRFDLVYPYPQNYP 177
+++ W F P L++ F +VY +P YP
Sbjct: 493 IEYVWKFCAPATSLVLFVFCVVYYHPVKYP 522
>DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-coupled
betaine transporterprotein protein.
Length = 600
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 266 LQFEWLFLKPQNELLMSRFDLVYPYPQNYP 177
+++ W F P L++ F +VY +P YP
Sbjct: 493 IEYVWKFCAPATSLVLFVFCVVYYHPVKYP 522
>AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical
protein Y46G5A.29 protein.
Length = 770
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 274 YKCQYCDNN*KRWKGKFCRWMCYRIYAHCR-WK 369
Y+C D W G+ C C IY CR WK
Sbjct: 502 YRCDCADG----WMGRNCERPCQDIYGSCRVWK 530
>AF026211-1|AAB71293.2| 600|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 3
protein.
Length = 600
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 266 LQFEWLFLKPQNELLMSRFDLVYPYPQNYP 177
+++ W F P L++ F +VY +P YP
Sbjct: 493 IEYVWKFCAPATSLVLFVFCVVYYHPVKYP 522
>Z12017-2|CAA78048.1| 455|Caenorhabditis elegans Hypothetical
protein R08D7.2 protein.
Length = 455
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 304 KRWKGKFCRWMCYRIYAHCRWKM*TH-LWIVG 396
++ + KFC MCY+ + R ++ H LWI G
Sbjct: 90 RKQRAKFCSEMCYQKSSFVRKQLDEHPLWITG 121
>Z69383-4|CAA93411.2| 326|Caenorhabditis elegans Hypothetical
protein F13E9.9 protein.
Length = 326
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 152 DQAFRIVFRDSSEDTDRRDQTV 217
D A R FRDS+EDTD D +V
Sbjct: 116 DSATRSRFRDSNEDTDSFDGSV 137
>AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical
protein K11D12.9 protein.
Length = 400
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 316 PSIFFSCCHNTDTCSRCYSLS 254
PSI F C + TCS CY S
Sbjct: 360 PSIVFMPCRHLITCSGCYDAS 380
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 EVDRTSQFIKM--KVFLILCCSLSLTINFCDFVNGSVGGLLSKLRD 136
E DR ++ K L CC L N DF+ GGLL RD
Sbjct: 272 EDDRCQLYLNSSTKTPLATCCESVLISNQLDFLQRHFGGLLVDKRD 317
>U67953-5|AAL13330.2| 287|Caenorhabditis elegans Male abnormal
protein 7 protein.
Length = 287
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = +1
Query: 310 WKGKFCRWMCYRIYAHC-RW 366
W G++C C IY C RW
Sbjct: 62 WMGRYCHRKCRNIYKSCDRW 81
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 5 EVDRTSQFIKM--KVFLILCCSLSLTINFCDFVNGSVGGLLSKLRD 136
E DR ++ K L CC L N DF+ GGLL RD
Sbjct: 272 EDDRCQLYLNSSTKTPLATCCESVLISNQLDFLQRHFGGLLVDKRD 317
>AY742796-1|AAW59416.1| 287|Caenorhabditis elegans MAB-7 protein.
Length = 287
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = +1
Query: 310 WKGKFCRWMCYRIYAHC-RW 366
W G++C C IY C RW
Sbjct: 62 WMGRYCHRKCRNIYKSCDRW 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,232,461
Number of Sequences: 27780
Number of extensions: 174119
Number of successful extensions: 516
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -