Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A07
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   1.8  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   2.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.1  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   7.2  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    24   9.5  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    24   9.5  

>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 4   LYICFSSSPY-WPVGCRKQSSRGGQVVV---FHRTAMVTT 111
           LYICFSS+P  WP G  +Q+ +    ++   FH   M+ T
Sbjct: 291 LYICFSSTPIPWP-GFSRQALKNLSPMLHFSFHGMLMIVT 329


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 169 PLRTV-SMVERRKDPGSQSTPWSPLPSDGTPLLVHHVNSVCGSPLANTAKKKN 14
           P +TV S+V++   P S   P   LPS  TP      NS  G  L +  K  N
Sbjct: 252 PQKTVRSIVKQTSSPHSSKMPKHSLPSSPTPF-----NSNSGDSLLSRIKNSN 299


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 168 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 260
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 288 YLYETFTSHHGREGCRIAWVDNWD 217
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -1

Query: 309 SPSFKIAYLYETFTSHHGREGCRIAWVDNWDD*NRRTPVQCLSVHNFHSGPFRWLREERI 130
           SP+F   +L ET+  H G + C       +D  +     + + +H+  +   R L E   
Sbjct: 317 SPAFCPDFLIETYLDHAGEKFCL-----QYDPNSLLYISKAMDMHDMSASHQRSLSEN-- 369

Query: 129 RVRNQHR 109
           R +NQH+
Sbjct: 370 RKKNQHK 376


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 100 LPSDGTPLLVHHVNSVCGSPLANTAKKK 17
           L  + T LL  H+N+   +PL+N   K+
Sbjct: 745 LQDNFTNLLCRHINNYSANPLSNDRPKR 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,172
Number of Sequences: 5004
Number of extensions: 37169
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)