Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A07
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825     29   2.3  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   3.1  
12_02_0249 + 16427590-16428975,16428990-16429082                       28   4.0  
07_03_1264 + 25294663-25294795,25294934-25295084,25295605-252958...    28   4.0  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.3  
09_04_0211 - 15656614-15657186                                         27   5.3  
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    27   5.3  
03_05_1115 + 30506986-30507396                                         27   9.3  
02_01_0412 - 3005600-3007759                                           27   9.3  

>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
          Length = 1023

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 142 RRKDPGSQSTPWSP---LPSDGTPLLVHHVNSVCGSPLA 35
           R+   G ++TPW+P   L SDG PL  H V    G  L+
Sbjct: 17  RQDSSGHRATPWNPTSALDSDGCPLDWHGVQCSNGQILS 55


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 267 SHHGREGCRIAWVDNWDD*NRR 202
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>12_02_0249 + 16427590-16428975,16428990-16429082
          Length = 492

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 105 DHGVDCEPGSFLLSTIETVLSGNYEPISTG-----PAFVDFNHPNYPPKRYDNPLARGG 266
           DHG + EP  F       V +G ++ I++G     P+FV  +  N P +R +   ARGG
Sbjct: 80  DHGYNYEPLRF-------VAAGRHDHIASGDNCQIPSFVSDSDENNPCRRIEPVAARGG 131


>07_03_1264 +
           25294663-25294795,25294934-25295084,25295605-25295867,
           25295976-25296033,25296130-25296259
          Length = 244

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 148 VERRKDPGSQSTPWSPLPSDGTPL 77
           +E+RKD  +  TP+   PSD TP+
Sbjct: 196 LEKRKDRLNAKTPYQASPSDATPV 219


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 225 YPPKRYDNPLARGGK 269
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>09_04_0211 - 15656614-15657186
          Length = 190

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 163 RTVSMVERRKDPGSQSTPWSPLP 95
           R++S+VERR+   S +T WS  P
Sbjct: 104 RSISVVERRESSRSSATTWSSPP 126


>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 93  DGNGDHGVDCEPGSFLLSTIETVLSGNYEPISTGPAFVDFNHPNYPPKRYDNPL 254
           +G  +H      GS  L  + T+LS  Y  +  G +    + P+ P    D PL
Sbjct: 270 NGLHNHSKAVSTGSLSLGLLTTILSVVYSAVRAGSSATVLSAPDSPRAGADKPL 323


>03_05_1115 + 30506986-30507396
          Length = 136

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 166 LRTVSMVERRKDPGSQSTPWSPLPSDGTPLLVHH 65
           LRT S  +RR+  GS S+  SP P    P   HH
Sbjct: 92  LRTASWKQRRRASGSSSSSSSPSPR-AAPERHHH 124


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 118 STPWSPLPSDGTPLLVHHVNSVCGSPLANTAKKKNI 11
           S+ ++  P   +P+LVHH N    +P + T++K+ I
Sbjct: 655 SSSFAGNPKLCSPMLVHHCNLAEAAPTSPTSRKQYI 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,270,543
Number of Sequences: 37544
Number of extensions: 263371
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)