Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A05
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    72   3e-14
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    53   1e-08
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    30   0.10 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.31 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   0.71 
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   2.2  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   2.2  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.0  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.0  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   5.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    24   6.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   6.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   6.7  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    24   6.7  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    24   8.8  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   8.8  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 71.7 bits (168), Expect = 3e-14
 Identities = 31/70 (44%), Positives = 44/70 (62%)
 Frame = +1

Query: 130 RPRQSGSMLAHGHDALVTRMKNIEMIELGRHRIRPWYFAPYPQELVNLSCIYICEFCLTY 309
           R R SGSM+ + H+  + R++NI  I +G H I PWYF+PYP+E   +  +YIC FC  Y
Sbjct: 164 RLRFSGSMVQNPHE--IARIRNINKICIGDHEIEPWYFSPYPKEFSEVDIVYICSFCFCY 221

Query: 310 RKSNKCPERH 339
             S +  +RH
Sbjct: 222 YGSERQFQRH 231


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 53.2 bits (122), Expect = 1e-08
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +1

Query: 193 NIEMIELGRHRIRPWYFAPYPQELVNLSCIYICEFCLTYRKSNKCPERH 339
           +I  +  G +RI+PWY +PYP+E      +YICE CL Y  S+   +RH
Sbjct: 102 SIRYLYFGTYRIKPWYTSPYPEEYSCAKNLYICESCLKYMNSDHVLQRH 150


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 10  KKMNRKRKANSVENEAELSVPPGEGTESENIASGAATPT-ARPRQSGSMLAHGHDAL 177
           + M R+ KA   E E +L V   E  ES   +SGAATPT + P+ S  ++  G  AL
Sbjct: 58  RAMKRREKA---EKE-KLGVVNDELAESSKPSSGAATPTRSAPKSSAGLINSGLRAL 110


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 295 IHIYKCKIS*PIPVDTVRSTMALSYACLILSFLYS 191
           I  Y+  IS  +P+  +   +A+S +CLI+SF YS
Sbjct: 218 IQFYEKSIS--LPMFHIAENLAISLSCLIISFRYS 250


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 52  EAELSVPPGEGTESENIASGAATPTARPRQSGSMLAHGHDALVTRMKNIEM 204
           E E +  P E T +   AS  ATP+     S S+     D  VT     E+
Sbjct: 49  EPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFEL 99


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 52  EAELSVPPGEGTESENIASGAATPTARPRQSGS 150
           E + S+PP E + S +  +G  TP ++ ++S +
Sbjct: 233 EPDSSIPPSESSVSISTDTGKETPPSKSKKSSN 265


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 37  NSVENEAELSVPPGEGTESENIASGA-ATPT 126
           N++EN +ELS  PG  + S +  SG  ATPT
Sbjct: 430 NALENRSELSASPGSVSSSRH--SGIFATPT 458


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 235 WYFAPYPQELVNLSCIYICEFCLTYRKSNKCPE 333
           WY  PYP +  +++  Y     + Y+   + PE
Sbjct: 259 WYLPPYPPQASDMASTYCACKVIVYQFFLRIPE 291


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 24/106 (22%), Positives = 42/106 (39%)
 Frame = +1

Query: 19   NRKRKANSVENEAELSVPPGEGTESENIASGAATPTARPRQSGSMLAHGHDALVTRMKNI 198
            N       V + +  S   G  T S +     ++ T+  + S  +L+H +   + R K  
Sbjct: 706  NSNALGQPVSSSSSYSHSKGRDTRSSSYV--VSSETSSLKSSRLILSHANSVRIQRSKGD 763

Query: 199  EMIELGRHRIRPWYFAPYPQELVNLSCIYICEFCLTYRKSNKCPER 336
             ++ L   ++ P  F P  + L       + E    YR S+K P R
Sbjct: 764  VILNLHLPKVNPERFLP-TKSLKLEEMKPLEEKVPIYRSSSKQPLR 808


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 235 WYFAPYPQELVNLSCIYICEFCLTYRKSNKCPE 333
           WY  PYP +  +++  Y     + Y+   + PE
Sbjct: 259 WYLPPYPPQASDMASTYCACKVIVYQFFLRIPE 291


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 189 HTSNQRVVPVREHAARLAGPSRWRGRAASDILTFSTF 79
           H+S+Q++      A +L  P RWR   +S     S F
Sbjct: 90  HSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQCSSPF 126


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 147  ARLAGPSRWRGRAASDILTFSTFTRW 70
            +R AGPS + G     +L F T T W
Sbjct: 1479 SRFAGPSIYLGSRTLLMLLFGTMTVW 1504


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +1

Query: 7    QKKMNRKRKANSVENEAELSVPPGEGTESENIASGAATPTARPRQSGSMLAHGHDALVTR 186
            + + NRK +    + E    V  G+ T +E  A+ AAT T       S   + H  L T 
Sbjct: 1328 ESRSNRKPRPTKRQREIMEQVESGKLTSAEGAAAIAATQTRNQNNFISKPFNVH-TLSTT 1386

Query: 187  MKNIEMIELGRHRIRP 234
            +    M  L +  I P
Sbjct: 1387 LSPWAMKSLAQAAISP 1402


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 10  KKMNRKRKANSVENEAELSVPPG 78
           K  NRK+K NS  N+  + + PG
Sbjct: 673 KLKNRKKKENSETNKNHVDMSPG 695


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 139 QSGSMLAHGHDALVTRMKNIEMIELGRHRIR 231
           + GS L+H  D    R K +  +  GR+  R
Sbjct: 297 RQGSTLSHSEDRFTIREKKVRELLSGRYDFR 327


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 233 GLILCLPNSIISIFFIRVTSASCPCASML 147
           GL++ L + I++ FF+   S SC   S+L
Sbjct: 62  GLLVFLHSLIVARFFVASKSRSCIVRSLL 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,592
Number of Sequences: 5004
Number of extensions: 31118
Number of successful extensions: 104
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)