Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A05
         (373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   0.88 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   2.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   3.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = +1

Query: 22  RKRKANSVENEAE 60
           RKRK++++ENE+E
Sbjct: 216 RKRKSSTIENESE 228


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 133 PRQSGSMLAHGHDALVTRMKNIEMIELGRHRIR 231
           PR    +L H  D L     +I  +    HRIR
Sbjct: 59  PRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIR 91


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 357 NLHLIKVSLRTLVTFPICQAEFTYINAR 274
           +L ++++S   LVTFP+ Q     +NAR
Sbjct: 891 SLEILRLSGNRLVTFPVWQVT---LNAR 915


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +1

Query: 280 IYICEFC-LTYRKSN 321
           +Y+CEFC   YR  N
Sbjct: 35  LYVCEFCNRRYRTKN 49


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 4   LQKKMNRKRKANSVENEAELSVPPGEGTESENIASGAA 117
           L++   R   A   E E  L+    E  ESEN    AA
Sbjct: 52  LEEARQRANDAGLTEEEVVLAKTIAECPESENTVQKAA 89


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 79  HQVAQIVLPH 50
           HQ+ Q+V+PH
Sbjct: 167 HQLKQVVMPH 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,072
Number of Sequences: 438
Number of extensions: 2877
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)