Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A02
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 32 0.051
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.48
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 0.83
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 3.4
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 4.5
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.5
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 5.9
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 7.8
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 31.9 bits (69), Expect = 0.051
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 47 FLQRQSI*INRQSICDFNYKNEGFISCNRRYPGCLYACYRYTMSREPSKCILRMGDNAQS 226
FLQ Q I R ++C KN + C C Y C++ + +KCI + D+A S
Sbjct: 408 FLQHQFYQIMRCALCGEFLKNAAGMQCI----DCHYTCHKKCYPKVVTKCISKSSDSASS 463
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 0.48
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -3
Query: 300 GHPLPDIVRTRPPQFVFAR--ACCLYKDCALSPIRRIHLLGSRDIV*R 163
GHP P V T PP + C YK C R IH SR++ R
Sbjct: 231 GHPSPATVTTLPPFMSMSTIPIPCKYKPCLNPACRFIHPTKSRNMTWR 278
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.9 bits (59), Expect = 0.83
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 252 IQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAAS-EEREHAMKLIDYLLMRGELISD 428
I +++A + + G + V+ + G LF+ S REH +KLI +L +
Sbjct: 287 IVNDLEACLDDIDKGLILNDHVLEKTGRTSLFYLPCSIYGREHEIKLIRKILRNSPRAIN 346
Query: 429 VSDLITVKNFEPVY 470
D ++ F P Y
Sbjct: 347 HQDKKDLETFNPYY 360
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 255 QTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYL 401
+T DA + L +G H D NRP AKL + + + L DY+
Sbjct: 410 KTFYDAFSKNLKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYI 456
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 210 VTMHNPCKDSMHAQIQTEVD-ASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMK 386
+T+ +P K+ ++T + AS+Q + ++ N P F DAASEE EH
Sbjct: 372 ITVTDPSKNLYERSVKTAAELASLQNVTETT--DNEIPNSPDF----LDAASEEDEHIPS 425
Query: 387 L 389
L
Sbjct: 426 L 426
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 83 SICDFNYKNEGFISCNRRYPGCLYACYRY 169
++CD + + + CNR+YP C C +Y
Sbjct: 54 TVCDVSSNSTFVVKCNRQYP-CT-RCLKY 80
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.0 bits (52), Expect = 5.9
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = -2
Query: 454 FLTVIRSLTSEISSPLMSK*SISFIACSLSSLAASKNSFANPGRLITSREKWAPIARYCT 275
FLT+I ++ S S +++ + ++ + +LAA + P + R+ P A T
Sbjct: 952 FLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKRKPEKPGASLFT 1011
Query: 274 DASTSVCICACMLSLQGLCIVTH 206
+ IC M L + +V H
Sbjct: 1012 FDMWKMIICQSMYQL-AVTLVLH 1033
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -3
Query: 306 RNGHPLPDIVRTRPPQFVFARACCLYKDCALSPIRRIHLLG 184
R GH L DI R P ++ + C R+H G
Sbjct: 866 RRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQG 906
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 297 HPLPDIVRTRPPQFVFARACCLYKDCALSPI 205
HPL + R Q + C +Y C+++PI
Sbjct: 298 HPLQLRILIRGLQLLKVGGCLVYSTCSINPI 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,151
Number of Sequences: 5004
Number of extensions: 38670
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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