Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_A01
(342 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 28 0.46
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.4
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 1.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 3.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 4.3
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 4.3
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 4.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 5.6
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 24 5.6
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 24 5.6
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 24 5.6
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.8
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 23 9.8
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 23 9.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 9.8
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 23 9.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 23 9.8
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 0.46
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 30 NRHGATLTNTHIP-GIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 200
N+ T T+T G GDK S AGK N+ + S + + S+ PS N+V
Sbjct: 252 NKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 1.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 131 IMVVVMKQVHFTSNRQFISNSRNMSVCEGSSVAV 30
I V + + F ++ S N+SV EGSS+ +
Sbjct: 73 IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +3
Query: 72 IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASAS 251
I ++ G L NN AF + + T + S++++ GL+ + K
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256
Query: 252 AAHTDFFNKN 281
+ T FF +N
Sbjct: 257 SNATSFFGEN 266
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 3.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 166 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 258
P F + + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 136 PRRRSRPEICPPFPI 180
PRRR RP PP PI
Sbjct: 100 PRRRGRPRKYPPKPI 114
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 4.3
Identities = 7/32 (21%), Positives = 20/32 (62%)
Frame = +3
Query: 105 NLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 200
++ H + H L++ +F+T+ + T + ++ T+
Sbjct: 431 SILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 4.3
Identities = 7/20 (35%), Positives = 9/20 (45%)
Frame = -1
Query: 222 TYIRDHHQQCWLMVNGKWWA 163
TY+ CW + WWA
Sbjct: 756 TYVYSSTMLCWQRITEPWWA 775
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 178 IYHQPTLLVVVSNICSRTRSVHQ 246
+YHQ TL + ICS+ ++V Q
Sbjct: 2124 LYHQLTLYQLQDLICSKCKTVKQ 2146
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 222 FKDKIGASASAAHTDFFNKNDYNLGG 299
F+D+ S AH N ND+N+ G
Sbjct: 370 FEDRTHLSDHGAHFHLGNANDFNMQG 395
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.2 bits (50), Expect = 5.6
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +1
Query: 142 RRSRPEICPPFPIYHQPTLLVVVSNICSRTRSVHQRAPLTLISLTRMTIIWAAN 303
+R+RP PP H P LL+ + H +L L R I AN
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFHHLLLSSLPCLPRSEIYRLAN 113
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 157 EICPPFPIYHQPTLLVVVSNICSRTRSVHQRAPLTLISLT 276
EICP Q L +C R +H+ L+ +S+T
Sbjct: 655 EICPVTYSIEQEKKLEKYKRVCLRGLDIHRNRRLSQLSVT 694
>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 201 GGGLEYMFKDKIGASASAAHTDFFNKNDYNLGG 299
G G +F DK G A F++ DY+ G
Sbjct: 61 GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 164 AHHFPFTINQHCWWWSRIYVQGQD 235
AH FP + Q C + + ++ G D
Sbjct: 121 AHQFPVHVTQFCPYANTTFLSGSD 144
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 24 NVNRHGATLTNTHIPGIGDKLSVAGKVNLFHNNDH 128
N +RH A+L N + +K+ + G ++ H N H
Sbjct: 203 NKHRHSASLQNLYKLLDENKVLMQGTIHWLHGNLH 237
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = -1
Query: 201 QQCWLM-VNGKWWAYFW 154
Q WL +NG+ W+Y W
Sbjct: 2208 QNFWLSSLNGRSWSYLW 2224
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 99 KVNLFHNND-HDLSAKAFATRNMPTISHLPSTN 194
++NL ++D H + F TRN PT S S++
Sbjct: 214 QLNLSSSSDSHSAQNEFFQTRNTPTFSFSSSSS 246
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 87 SVAGKVNLFHNNDHDLSAKAF 149
S V+ + NNDHDLS F
Sbjct: 528 SAQSLVDNYFNNDHDLSRYGF 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,768
Number of Sequences: 5004
Number of extensions: 31017
Number of successful extensions: 80
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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