Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_A01
         (342 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126437-1|BAC86549.1|  229|Homo sapiens protein ( Homo sapiens ...    30   2.2  
BC112391-1|AAI12392.1|  957|Homo sapiens ELKS/RAB6-interacting/C...    28   8.7  
BC111550-1|AAI11551.1|  957|Homo sapiens ERC2 protein protein.         28   8.7  
AL834286-1|CAD38960.1|  702|Homo sapiens hypothetical protein pr...    28   8.7  
AL603750-2|CAH72670.1|  785|Homo sapiens synapse defective 1, Rh...    28   8.7  
AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rh...    28   8.7  
AK023877-1|BAB14711.1|  560|Homo sapiens protein ( Homo sapiens ...    28   8.7  
AB002376-1|BAA20832.2|  970|Homo sapiens KIAA0378 protein.             28   8.7  

>AK126437-1|BAC86549.1|  229|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44473 fis, clone UTERU2030213. ).
          Length = 229

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 136 PRRRSRPEICPPFPIYHQP-TLLVVVSNICSRTRSVHQRAPL 258
           PR +SRP  C P  + H+P T     S  C +   VH++ P+
Sbjct: 160 PRPKSRPASCCPHSLRHRPLTSSPRSSQSCCQLFGVHRQRPI 201


>BC112391-1|AAI12392.1|  957|Homo sapiens ELKS/RAB6-interacting/CAST
           family member 2 protein.
          Length = 957

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +3

Query: 39  GATLTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEY 218
           G TL+  +I  +    + +G + L   +DH+  A     +   T+    +    GG +  
Sbjct: 41  GKTLSMENIQSLNAAYATSGPMYL---SDHEGVASTTYPKGTMTLGRATNRAVYGGRVTA 97

Query: 219 MFKDKIGASASAAHTDFFNKNDYNLG 296
           M      ASA  +HTD  +  D + G
Sbjct: 98  MGSSPNIASAGLSHTDVLSYTDQHGG 123


>BC111550-1|AAI11551.1|  957|Homo sapiens ERC2 protein protein.
          Length = 957

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +3

Query: 39  GATLTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEY 218
           G TL+  +I  +    + +G + L   +DH+  A     +   T+    +    GG +  
Sbjct: 41  GKTLSMENIQSLNAAYATSGPMYL---SDHEGVASTTYPKGTMTLGRATNRAVYGGRVTA 97

Query: 219 MFKDKIGASASAAHTDFFNKNDYNLG 296
           M      ASA  +HTD  +  D + G
Sbjct: 98  MGSSPNIASAGLSHTDVLSYTDQHGG 123


>AL834286-1|CAD38960.1|  702|Homo sapiens hypothetical protein
           protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNT 197
           +P    KLSV G +N  ++ D+  S   +  R +     LPS NT
Sbjct: 375 LPEFSRKLSVKGTLNYINSPDNTPSLSKYNCREIHHTDILPSGNT 419


>AL603750-2|CAH72670.1|  785|Homo sapiens synapse defective 1, Rho
           GTPase, homolog 2 (C. elegans) protein.
          Length = 785

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNT 197
           +P    KLSV G +N  ++ D+  S   +  R +     LPS NT
Sbjct: 458 LPEFSRKLSVKGTLNYINSPDNTPSLSKYNCREVHHTDILPSGNT 502


>AL603750-1|CAH72669.1| 1116|Homo sapiens synapse defective 1, Rho
           GTPase, homolog 2 (C. elegans) protein.
          Length = 1116

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNT 197
           +P    KLSV G +N  ++ D+  S   +  R +     LPS NT
Sbjct: 458 LPEFSRKLSVKGTLNYINSPDNTPSLSKYNCREVHHTDILPSGNT 502


>AK023877-1|BAB14711.1|  560|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13815 fis, clone THYRO1000381. ).
          Length = 560

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNT 197
           +P    KLSV G +N  ++ D+  S   +  R +     LPS NT
Sbjct: 458 LPEFSRKLSVKGTLNYINSPDNTPSLSKYNCREIHHTDILPSGNT 502


>AB002376-1|BAA20832.2|  970|Homo sapiens KIAA0378 protein.
          Length = 970

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +3

Query: 39  GATLTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEY 218
           G TL+  +I  +    + +G + L   +DH+  A     +   T+    +    GG +  
Sbjct: 54  GKTLSMENIQSLNAAYATSGPMYL---SDHEGVASTTYPKGTMTLGRATNRAVYGGRVTA 110

Query: 219 MFKDKIGASASAAHTDFFNKNDYNLG 296
           M      ASA  +HTD  +  D + G
Sbjct: 111 MGSSPNIASAGLSHTDVLSYTDQHGG 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,257,569
Number of Sequences: 237096
Number of extensions: 1199941
Number of successful extensions: 1981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)