Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P22
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    28   1.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   1.8  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.6  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.6  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 577 VGNHSH-YQDPVTKEPVGAAHHDD 509
           V +H+H ++ PV+ +PVG  H D+
Sbjct: 89  VSHHAHRHEPPVSDQPVGIVHEDE 112


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 482  LANAEQVDQVVVMRSANWFLSDWILVVTVVTDLAELVVVNRF 607
            LA+   V   +++   +W+L  W L  TV++ L  ++ + RF
Sbjct: 1680 LAHGITVFMFIIVFEVSWYLEAWCLAKTVLSMLC-IIAIQRF 1720


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 476 ERLANAEQVDQVVVMRSANWFLSDWILVVTVV 571
           ++LAN   VD +  + S+ +  S W+L  T++
Sbjct: 4   DKLANVATVDAIFAISSSTFLWSTWVLQRTIL 35


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 559 YQDPVTKEPVGAAHHDDLIYLFSIS*SFPFIQVSDTLESKTVD 431
           Y+DP  K  + +A HD  + +++ + + P   + +   S  VD
Sbjct: 291 YEDPFQKSIIASAAHDGCVSIWNTACARPMAVIHELSCSSFVD 333


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 180 PIFREVNGISPFKRP*VVWLKN 115
           PIF + N I PF  P V W +N
Sbjct: 260 PIFFDKNTIKPFHDPTVPWDRN 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,575
Number of Sequences: 5004
Number of extensions: 46908
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)