Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P22
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579...    29   3.3  
03_05_0686 + 26753253-26753389,26753618-26753745,26754370-267551...    29   4.3  
04_04_0836 + 28546414-28547001                                         27   9.9  
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650...    27   9.9  

>11_03_0162 -
           10956997-10957323,10957390-10957568,10957823-10957922,
           10959333-10959397,10959480-10959572,10961062-10961607,
           10961627-10961678,10961753-10961884,10963049-10963210,
           10963532-10963582
          Length = 568

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 467 PGVRHPRIEDSR*DDSQFGTNFAKIRVTRKPSGEDISGS*EGPCRWPR 324
           P V +P  + SR D   F ++      + + SG D+S S  G  +W R
Sbjct: 247 PSVTNPLSQGSRSDGGVFASDLPPGNASSQGSGADLSASGNGTDQWRR 294


>03_05_0686 +
           26753253-26753389,26753618-26753745,26754370-26755196,
           26756016-26756690
          Length = 588

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -1

Query: 506 DLLVQH*LIVPVHPGVRHPRIEDSR*DDSQFGTNFAKIRVTRKPSGEDISGS*EGPCRWP 327
           D+  Q+ + + +  G+R   I D+  D +QF     +  +TR+   +D+    EGP   P
Sbjct: 316 DICNQYDVALSIGDGLRPGSIYDAN-DSAQFAELLTQGELTRRAWAKDVQVMNEGPGHIP 374

Query: 326 RTVSPQELSAQ 294
               P+ +  Q
Sbjct: 375 MHKIPENMEKQ 385


>04_04_0836 + 28546414-28547001
          Length = 195

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 315 AHCAGPPTRPFSAPGDIL 368
           AHC G  T P ++PGD+L
Sbjct: 68  AHCVGDVTAPPASPGDLL 85


>01_03_0214 +
           13863123-13863593,13863671-13864132,13864308-13865038,
           13865121-13865291,13865371-13865629,13866069-13866158
          Length = 727

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 278 IWKAEISSNNTEEGLFRKESPLQRXLGKRNLFP 180
           +W+   S  NT+E  FRK S + R L +RN  P
Sbjct: 58  VWEEFCSLKNTQE--FRKSSEVHRLLQQRNEHP 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,713,519
Number of Sequences: 37544
Number of extensions: 324636
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)