Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P22
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    29   3.8  

>AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical
           protein F54A3.4 protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 396 DTRDPETLGRGYLRELRRALSVAPHSEPPRT 304
           D R   +  R ++R   ++ S APHS PP T
Sbjct: 696 DNRSHNSNNRSHIRRPAQSRSTAPHSNPPAT 726


>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 321 CAGPPTRPFSAPGDILSRGFPGHA 392
           C   P  P  APGD  SRG+PG +
Sbjct: 183 CPPGPPGPTGAPGDKGSRGYPGES 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,759
Number of Sequences: 27780
Number of extensions: 270135
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)