Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_P18
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 31 0.056
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 30 0.13
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 29 0.23
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 27 0.91
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 27 1.2
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc... 27 1.6
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 27 1.6
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 26 2.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 2.8
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 2.8
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 26 2.8
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 3.7
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 4.8
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 6.4
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 24 8.5
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 24 8.5
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 8.5
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 31.5 bits (68), Expect = 0.056
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +3
Query: 48 NTYPADDYMHTEYLNNVTLNHKAQSQ-----APPVVGAIFGLGRAGSIHLSNIIHNPRIV 212
NT + HT+ N++ ++K S A G G A S SNI + +
Sbjct: 14 NTEQVSEKQHTDTALNISQDNKTSSSSAKRGAKGRRGTKGKSGPANSSQTSNIEGSNALE 73
Query: 213 LKYIVDDRSEVFSELKKYWKLDDTTIFLTSKD 308
L++ D + V EL W +DD + L D
Sbjct: 74 LEFDRDSQLSVLQELFPSWTIDDLSFALEEAD 105
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 30.3 bits (65), Expect = 0.13
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 326 DKEVHVVFIGSPTWTHHEIVVNSIANNKDVXCE 424
D +V +V+I S H+E+V ++ N+K V CE
Sbjct: 79 DDKVDIVYISSTHPQHYEVVKLALLNDKAVLCE 111
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 29.5 bits (63), Expect = 0.23
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 226 TIYLRTIRGLWMILDKWMEPARPRP 152
TI L + GLW DKW P+ P P
Sbjct: 34 TIGLIVLLGLWSTQDKWHTPSEPDP 58
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 0.91
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 243 VFSELKKYWKLDDTTI 290
+F +L+K WK DDTT+
Sbjct: 411 IFDKLQKLWKYDDTTL 426
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 326 DKEVHVVFIGSPTWTHHEIVVNSIANNKDVXCE 424
D + +V I P H+E+V ++ K V CE
Sbjct: 66 DSNIELVVISLPPNVHYEVVSQALNAGKHVLCE 98
>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
precursor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 331 LIXITRAASLEVKNMVVSSSFQYFFNSENTSLRSSTIYLRTIR-GLWMILDKWMEP 167
++ T S + +++ ++F Y N ++ +R + G W++L+ W+ P
Sbjct: 1 MLSFTSVFSFFLHALLLKTAFSYVIKRNNPVFDYTSEKVRGVNIGGWLVLENWITP 56
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 287 HILNFQGCSACYXDKEVHVVFIGSPTWTHHEIVVNSIANNKDVXCE 424
+IL + D + +V + P H EIV ++ K V CE
Sbjct: 53 NILVYTNLDELLADVNIELVVVSLPPNVHSEIVKKALNAGKHVVCE 98
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 129 PPVVGAIFGLGRAGSIHLSNIIHNPRIVLKYIV 227
P V G +FG+ RAG + + + IH R +K I+
Sbjct: 144 PGVTGDVFGINRAGYV-IHSAIHRARPDVKSIM 175
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 318 HALHPWKLRIWWCHRASSISLTPKTLR 238
+ LH L IW C++A I+ P +L+
Sbjct: 1510 NVLHSLSLEIWKCYKAYDITEFPDSLK 1536
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 171 SIHLSNIIHNPRIVLKYIVDDRSEVFSELKKYWKL 275
++H+ + NP+ + Y+VD E ++ +Y KL
Sbjct: 257 NMHIRYVSANPKTPVMYMVDPAYEPHKQIARYEKL 291
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 18 FAGPSPYVFKNTYPADDYMHTEYLNNVTLNHKAQSQAPPVVG 143
FAGP P + + YM+T Y N + K A P G
Sbjct: 216 FAGP-PIATSTVFASPTYMYTLYANYASTASKPTIIATPTAG 256
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 3.7
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -1
Query: 277 SSFQYFFNSE--NTSLRSSTIYLRTIRGLWMILDKWMEPARP 158
+ FQ NSE N S I L I W+ L+ WM P
Sbjct: 145 NEFQLSSNSEWENVSKEFLEIVLTIIEREWLYLEAWMPKIEP 186
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 265 YFFNSENTSLRSSTIYLRTIRGLWMIL 185
+F+ +E++ LR+ T+Y R + +W +L
Sbjct: 443 FFYITESSDLRNRTVYFR--KDIWKLL 467
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.6 bits (51), Expect = 6.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1
Query: 169 PARPRPKIAPTT 134
P +P+PKI+PTT
Sbjct: 430 PVQPKPKISPTT 441
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 8.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 403 VSDGVNNDFVMGPSRRSNEYDMYFLIXITRAASLE 299
VS G+ F P RR+ + MY ++R +E
Sbjct: 32 VSHGIPCVFTARPKRRTGQRQMYIKSLVSRLEQME 66
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 16 SLLDHLRTSLRTLIPLTTTCIQNIS 90
SLL LR+S LI + CI+NIS
Sbjct: 296 SLLRLLRSSYLPLILASVACIRNIS 320
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 232 SSTIYLRTIRGLWMILDKWMEPARPRPKIAPTTGGAWLWALWFKVTLL 89
S T+ L ++ W+ L + + P RP PK A ++A +++ T+L
Sbjct: 179 SITLSLYSLTTFWVCLHEELAPFRPFPKFLSVK--AIIFASYWQQTVL 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,472
Number of Sequences: 5004
Number of extensions: 36121
Number of successful extensions: 113
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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