Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_P18
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612... 33 0.072
04_01_0616 - 8069107-8069217,8070127-8070499,8070514-8070751,807... 30 0.88
05_06_0266 + 26779191-26779227,26781089-26781218,26781344-26782013 29 1.5
03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826 29 1.5
01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887 28 2.7
01_06_0367 + 28789824-28790110,28790204-28790744 28 2.7
01_01_1195 - 9567023-9567789,9567871-9568120 28 2.7
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 28 3.6
09_02_0610 - 11206198-11206588,11206812-11207001,11207116-112071... 27 4.7
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 27 4.7
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 27 4.7
02_05_0006 - 24897409-24897922,24898041-24898303 27 6.2
11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121 27 8.2
10_08_0382 - 17408873-17409440,17410711-17410840,17410936-17411068 27 8.2
01_06_1785 - 39859790-39860671 27 8.2
>12_02_0333 +
17660454-17660502,17660587-17660704,17661181-17661255,
17661341-17661412,17661606-17661643,17661758-17661791,
17662396-17662519,17663334-17663417,17663991-17664056,
17664110-17664316
Length = 288
Score = 33.5 bits (73), Expect = 0.072
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 21 AGPSPYVFKNTYPADDYMHTEYLNNVTLNHKAQSQAPPVVGAIFGLGRA 167
AG SP + A MH Y+N TL+++ Q+ P +G + G+G A
Sbjct: 76 AGSSPGYVLDAMKAGSTMHATYINTATLSNELQNYTP--LGQVAGIGLA 122
>04_01_0616 -
8069107-8069217,8070127-8070499,8070514-8070751,
8070881-8071189,8071225-8071363
Length = 389
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 219 YIVDDRSEVFSELKKYWKLDDTTIFLTSKD-AARVXKIRKYMSYSLDLR 362
++V RS ++KK W++ + T+FL ++ R ++ + S SLDL+
Sbjct: 298 FLVTKRSSSAPKIKKVWQVKEKTLFLYLRNRVPRQAEMLEVRSCSLDLK 346
>05_06_0266 + 26779191-26779227,26781089-26781218,26781344-26782013
Length = 278
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 286 PYS*LPRMQRVLXR*GSTCRIHWISDLDPSRNR 384
P S P + + L R G +CR+ WI+ L P R
Sbjct: 3 PVSYTPSVSQWLQRCGKSCRLRWINYLRPDLKR 35
>03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826
Length = 245
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 310 QRVLXR*GSTCRIHWISDLDPSRNR 384
+++ R G +CR+ W + LDP NR
Sbjct: 32 EKLQGRSGKSCRLRWFNQLDPRINR 56
>01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887
Length = 302
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 289 YS*LPRMQRVLXR*GSTCRIHWISDLDPSRNR 384
+S +P++ L R G +CR+ WI+ L P R
Sbjct: 40 WSSVPKLAGRLQRCGKSCRLRWINYLRPDLKR 71
>01_06_0367 + 28789824-28790110,28790204-28790744
Length = 275
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 298 LPRMQRVLXR*GSTCRIHWISDLDPSRNRC 387
LPR +L R G +CR+ W++ L P RC
Sbjct: 48 LPRRAGLL-RCGKSCRLRWMNYLRPDIKRC 76
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 325 R*GSTCRIHWISDLDPSRNR 384
R G +CR+ W + LDP NR
Sbjct: 82 RSGKSCRLRWFNQLDPRINR 101
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 271 FQYFFNSENTSLRSSTIYLRTIRG-LWMILDKWMEPARPRPKIAPTTGGAWL 119
+ YFF+S+ +R S +Y R L + + K + RP P +A TGGAW+
Sbjct: 110 YYYFFSSQ---VRRSIVYGEQPRNRLDLYIPKDIN--RPCPVVAFVTGGAWI 156
>09_02_0610 -
11206198-11206588,11206812-11207001,11207116-11207184,
11207546-11207672,11207809-11208128,11208196-11208353,
11208503-11208580,11209484-11209555,11209994-11210135,
11212580-11213064,11214362-11214947,11215093-11215177
Length = 900
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 27 PSPYVFKNTYPADDYMHTEYLNNVTLNHKAQSQAPPVVGAI 149
PSP + Y +D Y + N+ L A S PP++ A+
Sbjct: 328 PSPLDSSSVYSSDGYRADDGNYNLVLRRTAASALPPMLNAM 368
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 172 EPARPRPKIAPTTGGAWL 119
+P +P P +A TGGAW+
Sbjct: 207 DPKKPSPVVAFVTGGAWI 224
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 250 ENTSLRSSTIYLRTIRGLWMILDKWMEPARPRPKIAPTTGGAWLWALW 107
E + R ST+Y + GL+M+ +KWM + I T G W W
Sbjct: 216 EPETQRLSTLYNADV-GLYMLANKWMVDEKELRVIHYTLGPLKPWDWW 262
>02_05_0006 - 24897409-24897922,24898041-24898303
Length = 258
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 298 LPRMQRVLXR*GSTCRIHWISDLDPSRNR 384
LPR Q L R G +CR+ WI+ L P R
Sbjct: 40 LPR-QAGLLRCGKSCRLRWINYLRPDIKR 67
>11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121
Length = 196
Score = 26.6 bits (56), Expect = 8.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 149 LWPWSRWLHPF 181
+WPW RW+ P+
Sbjct: 138 IWPWRRWIQPW 148
>10_08_0382 - 17408873-17409440,17410711-17410840,17410936-17411068
Length = 276
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 283 PPYS*LPRMQRVLXR*GSTCRIHWISDLDPSRNR 384
P + LP+ Q L R G +CR+ WI+ L P R
Sbjct: 35 PNWRALPK-QAGLLRCGKSCRLRWINYLRPDIKR 67
>01_06_1785 - 39859790-39860671
Length = 293
Score = 26.6 bits (56), Expect = 8.2
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = -1
Query: 391 VNNDFVMG--PSRRSNEYDMYFLIXITRAASLEVKNMVVSSSFQYFFNSENTSLRSSTIY 218
V+ DF G +R + EY + ++ A+ + + V + + ++ SLRS ++
Sbjct: 173 VDADFRAGLEVARATAEYAV--VVAAVPASVVVAREEAVGRAVRVAADAARRSLRSHGLH 230
Query: 217 LRTIRGLWMILDKWMEPARPRPKIAPTTGGA 125
+ R +L KW+ P + +P+ GA
Sbjct: 231 VPPWRKTRYMLAKWLGPYKRSTATSPSAAGA 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,107
Number of Sequences: 37544
Number of extensions: 248270
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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