Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P16
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   6.7  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   8.9  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   8.9  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +3

Query: 213 DFAYGESSELDAKLIELPYVGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYT 392
           D  Y + SE D ++ +   +G++ SL       IDGL    +    DL        N Y 
Sbjct: 45  DPKYAKLSEQDVQVFK-SIIGKDGSL-------IDGLDKSTDPA--DLDAFNIDWMNKYR 94

Query: 393 NEVDVYLPKFKCETTTNLKEVLQAMNVKKL 482
            +  + L   K +TT  + E+L+  N KKL
Sbjct: 95  GKTQLAL---KPKTTQQVSEILKYCNQKKL 121


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 258 ELPYVGEESSLLVVLPNKIDGLHALEEKLKKD 353
           EL Y G++  +  +LPN ++    LEE+ K +
Sbjct: 376 ELLYPGKDEDIDTILPNVLEYYRHLEEEEKDE 407


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  GLKTTPINVSKIWWILVRWTVAHSVF 87
           GL    + ++K WW ++ WTV ++ F
Sbjct: 188 GLNGKKMYITK-WWDMINWTVVNNRF 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,071
Number of Sequences: 5004
Number of extensions: 47022
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)