Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_P14
(354 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT001593-1|AAN71348.1| 750|Drosophila melanogaster RE27538p pro... 32 0.24
AE014296-790|AAF47859.2| 750|Drosophila melanogaster CG15005-PA... 32 0.24
BT029039-1|ABJ16972.1| 1718|Drosophila melanogaster IP03621p pro... 30 0.97
AE014134-668|AAF51067.1| 1131|Drosophila melanogaster CG10019-PA... 30 0.97
BT010007-1|AAQ22476.1| 1425|Drosophila melanogaster RE28166p pro... 29 2.2
AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain ... 29 2.2
AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-P... 29 2.2
BT009995-1|AAQ22464.1| 1164|Drosophila melanogaster RE37196p pro... 28 3.0
AE013599-2768|AAF57637.2| 1541|Drosophila melanogaster CG15080-P... 28 3.0
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio... 28 3.9
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein. 28 3.9
AF197910-1|AAF15596.1| 1490|Drosophila melanogaster Numb-associa... 28 3.9
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA... 28 3.9
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD... 28 3.9
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB... 28 3.9
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC... 28 3.9
AY113464-1|AAM29469.1| 482|Drosophila melanogaster RE39008p pro... 27 6.9
AE014298-2785|AAF48898.1| 482|Drosophila melanogaster CG7326-PA... 27 6.9
AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-P... 27 6.9
AY128472-1|AAM75065.1| 836|Drosophila melanogaster RE28238p pro... 27 9.1
AY071298-1|AAL48920.1| 687|Drosophila melanogaster RE32772p pro... 27 9.1
AJ224676-1|CAA12058.1| 687|Drosophila melanogaster rho type GEF... 27 9.1
AE014134-3232|AAF53887.2| 687|Drosophila melanogaster CG10043-P... 27 9.1
AE014134-3231|AAF53886.1| 687|Drosophila melanogaster CG10043-P... 27 9.1
AE014134-2320|AAN10833.1| 836|Drosophila melanogaster CG6043-PC... 27 9.1
AE014134-2318|AAN10831.1| 759|Drosophila melanogaster CG6043-PB... 27 9.1
AE014134-2317|AAF53274.2| 759|Drosophila melanogaster CG6043-PA... 27 9.1
AE014134-2316|AAN10830.1| 918|Drosophila melanogaster CG6043-PD... 27 9.1
AE013599-929|AAF58897.1| 1127|Drosophila melanogaster CG1625-PA ... 27 9.1
>BT001593-1|AAN71348.1| 750|Drosophila melanogaster RE27538p
protein.
Length = 750
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P P +SQP PS +Y+ + P+ P +P Y+ P
Sbjct: 339 HPPPSYSQPPQHPSSSYDQPAQHPSSSYDQPPKHPSSSYEQP 380
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P + QP PS +YE P+ P +P YD P
Sbjct: 361 HPSSSYDQPPKHPSSSYEQPPQHPSSSYDQPPQHPSSSYDQP 402
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P + QP+ PS +Y+ P+ P +P YD P
Sbjct: 350 HPSSSYDQPAQHPSSSYDQPPKHPSSSYEQPPQHPSSSYDQP 391
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P + QP PS +Y+ P P +P YD P
Sbjct: 317 HPSSSYDQPPQHPSSSYDQPPQHPPPSYSQPPQHPSSSYDQP 358
>AE014296-790|AAF47859.2| 750|Drosophila melanogaster CG15005-PA
protein.
Length = 750
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P P +SQP PS +Y+ + P+ P +P Y+ P
Sbjct: 339 HPPPSYSQPPQHPSSSYDQPAQHPSSSYDQPPKHPSSSYEQP 380
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P + QP PS +YE P+ P +P YD P
Sbjct: 361 HPSSSYDQPPKHPSSSYEQPPQHPSSSYDQPPQHPSSSYDQP 402
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P + QP+ PS +Y+ P+ P +P YD P
Sbjct: 350 HPSSSYDQPAQHPSSSYDQPPKHPSSSYEQPPQHPSSSYDQP 391
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 186 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 311
+P + QP PS +Y+ P P +P YD P
Sbjct: 317 HPSSSYDQPPQHPSSSYDQPPQHPPPSYSQPPQHPSSSYDQP 358
>BT029039-1|ABJ16972.1| 1718|Drosophila melanogaster IP03621p
protein.
Length = 1718
Score = 29.9 bits (64), Expect = 0.97
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +1
Query: 28 KLSCFSSSPY-----WPWLPQTECTWSIITLIIIQARFTWW 135
KL SSP W W QT +II +III +R WW
Sbjct: 60 KLKAHHSSPSSIFSTWKWPQQTITVRAIIIIIIICSRRRWW 100
>AE014134-668|AAF51067.1| 1131|Drosophila melanogaster CG10019-PA
protein.
Length = 1131
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 99 NPDYNPGQVHVVDNSGVPSDGNSDHVVIANPD 194
NP NP Q + +G P GN+D PD
Sbjct: 94 NPSENPRQYSSLQTAGHPGSGNTDQTAQTKPD 125
>BT010007-1|AAQ22476.1| 1425|Drosophila melanogaster RE28166p
protein.
Length = 1425
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +3
Query: 84 HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTG 254
++V +P+ P + D++ + ++ ++A PD + N P+G+ P++ G
Sbjct: 790 YLVGKSPEDFPISPRLRDSNSRTARRPNESTLVAQPDVTMEEAENQPAGSVTPVTAG 846
>AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain
protein MUS101 protein.
Length = 1425
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +3
Query: 84 HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTG 254
++V +P+ P + D++ + ++ ++A PD + N P+G+ P++ G
Sbjct: 790 YLVGKSPEDFPISPRLRDSNSRTARRPNESTLVAQPDVTMEEAENQPAGSVTPVTAG 846
>AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-PA
protein.
Length = 1425
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +3
Query: 84 HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTG 254
++V +P+ P + D++ + ++ ++A PD + N P+G+ P++ G
Sbjct: 790 YLVGKSPEDFPISPRLRDSNSRTARRPNESTLVAQPDVTMEEAENQPAGSVTPVTAG 846
>BT009995-1|AAQ22464.1| 1164|Drosophila melanogaster RE37196p
protein.
Length = 1164
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 75 NRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHV 176
N+ ++H P YN Q +++NS V + N HV
Sbjct: 374 NQQGPLNHRPSYNQVQNEILENSNVEYEPNPYHV 407
>AE013599-2768|AAF57637.2| 1541|Drosophila melanogaster CG15080-PA
protein.
Length = 1541
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 75 NRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHV 176
N+ ++H P YN Q +++NS V + N HV
Sbjct: 751 NQQGPLNHRPSYNQVQNEILENSNVEYEPNPYHV 784
>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
corepressor Atro protein.
Length = 1985
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/73 (26%), Positives = 25/73 (34%)
Frame = +3
Query: 102 PDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 281
PD PG H+ N G P D + Q P+ P +T P + P
Sbjct: 808 PDIKPGFGHLPHNVGSPLDAAHKYGPPPTSQESQQQQPQPPAHQVPPGATPPPGIAMPKP 867
Query: 282 NYPPKRYDNPLAR 320
+Y PL R
Sbjct: 868 HYQHDVQTPPLGR 880
>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
Length = 1966
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/73 (26%), Positives = 25/73 (34%)
Frame = +3
Query: 102 PDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 281
PD PG H+ N G P D + Q P+ P +T P + P
Sbjct: 808 PDIKPGFGHLPHNVGSPLDAAHKYGPPPTSQESQQQQPQPPAHQVPPGATPPPGIAMPKP 867
Query: 282 NYPPKRYDNPLAR 320
+Y PL R
Sbjct: 868 HYQHDVQTPPLGR 880
>AF197910-1|AAF15596.1| 1490|Drosophila melanogaster Numb-associated
kinase protein.
Length = 1490
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 123 VHVVDNSGVPSDGNSDHVVIAN--PDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNY 287
V V NS P +H +I N P+P + +N + N STG + V N P++
Sbjct: 1193 VSVSVNSSAPQLVTINHSIIINKTPEPPMNYNNNNNNNNQTAKSTGTSSVYVNVPSF 1249
>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
isoform A protein.
Length = 1966
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/73 (26%), Positives = 25/73 (34%)
Frame = +3
Query: 102 PDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 281
PD PG H+ N G P D + Q P+ P +T P + P
Sbjct: 808 PDIKPGFGHLPHNVGSPLDAAHKYGPPPTSQESQQQQPQPPAHQVPPGATPPPGIAMPKP 867
Query: 282 NYPPKRYDNPLAR 320
+Y PL R
Sbjct: 868 HYQHDVQTPPLGR 880
>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
isoform D protein.
Length = 1985
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/73 (26%), Positives = 25/73 (34%)
Frame = +3
Query: 102 PDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 281
PD PG H+ N G P D + Q P+ P +T P + P
Sbjct: 808 PDIKPGFGHLPHNVGSPLDAAHKYGPPPTSQESQQQQPQPPAHQVPPGATPPPGIAMPKP 867
Query: 282 NYPPKRYDNPLAR 320
+Y PL R
Sbjct: 868 HYQHDVQTPPLGR 880
>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
isoform B protein.
Length = 1985
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/73 (26%), Positives = 25/73 (34%)
Frame = +3
Query: 102 PDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 281
PD PG H+ N G P D + Q P+ P +T P + P
Sbjct: 808 PDIKPGFGHLPHNVGSPLDAAHKYGPPPTSQESQQQQPQPPAHQVPPGATPPPGIAMPKP 867
Query: 282 NYPPKRYDNPLAR 320
+Y PL R
Sbjct: 868 HYQHDVQTPPLGR 880
>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
isoform C protein.
Length = 1988
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/73 (26%), Positives = 25/73 (34%)
Frame = +3
Query: 102 PDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 281
PD PG H+ N G P D + Q P+ P +T P + P
Sbjct: 808 PDIKPGFGHLPHNVGSPLDAAHKYGPPPTSQESQQQQPQPPAHQVPPGATPPPGIAMPKP 867
Query: 282 NYPPKRYDNPLAR 320
+Y PL R
Sbjct: 868 HYQHDVQTPPLGR 880
>AY113464-1|AAM29469.1| 482|Drosophila melanogaster RE39008p
protein.
Length = 482
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNY 287
++ +P FF ++GP+G +PIS PA D F NY
Sbjct: 156 LLVDPTEFFCH-NHGPAGKTQPISLVPAETDLFYGLNY 192
>AE014298-2785|AAF48898.1| 482|Drosophila melanogaster CG7326-PA
protein.
Length = 482
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNY 287
++ +P FF ++GP+G +PIS PA D F NY
Sbjct: 156 LLVDPTEFFCH-NHGPAGKTQPISLVPAETDLFYGLNY 192
>AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-PA
protein.
Length = 3687
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 40 FSSSPYWPWL--PQTECTWSI 96
F SSPY+P L P +EC W +
Sbjct: 2213 FISSPYYPHLPHPHSECIWIV 2233
>AY128472-1|AAM75065.1| 836|Drosophila melanogaster RE28238p
protein.
Length = 836
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 204 SQPSNG-PSGNYEPISTGPAFVDFNHPNYPP--KRYDNP 311
+QP+ G P+G+ I + FVD + NYPP +RY +P
Sbjct: 761 AQPNFGAPAGHI--IRSANQFVDQGYQNYPPQAQRYPSP 797
>AY071298-1|AAL48920.1| 687|Drosophila melanogaster RE32772p
protein.
Length = 687
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 159 RPMEHHYCPPREPGLDYNQGYDRPRALCLRQP 64
+P HH PP+ P L + G PR+ + P
Sbjct: 466 QPPPHHLHPPQPPSLPSHLGASGPRSSSAQTP 497
>AJ224676-1|CAA12058.1| 687|Drosophila melanogaster rho type GEF
protein.
Length = 687
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 159 RPMEHHYCPPREPGLDYNQGYDRPRALCLRQP 64
+P HH PP+ P L + G PR+ + P
Sbjct: 466 QPPPHHLHPPQPPSLPSHLGASGPRSSSAQTP 497
>AE014134-3232|AAF53887.2| 687|Drosophila melanogaster CG10043-PB,
isoform B protein.
Length = 687
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 159 RPMEHHYCPPREPGLDYNQGYDRPRALCLRQP 64
+P HH PP+ P L + G PR+ + P
Sbjct: 466 QPPPHHLHPPQPPSLPSHLGASGPRSSSAQTP 497
>AE014134-3231|AAF53886.1| 687|Drosophila melanogaster CG10043-PA,
isoform A protein.
Length = 687
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 159 RPMEHHYCPPREPGLDYNQGYDRPRALCLRQP 64
+P HH PP+ P L + G PR+ + P
Sbjct: 466 QPPPHHLHPPQPPSLPSHLGASGPRSSSAQTP 497
>AE014134-2320|AAN10833.1| 836|Drosophila melanogaster CG6043-PC,
isoform C protein.
Length = 836
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 204 SQPSNG-PSGNYEPISTGPAFVDFNHPNYPP--KRYDNP 311
+QP+ G P+G+ I + FVD + NYPP +RY +P
Sbjct: 761 AQPNFGAPAGHI--IRSANQFVDQGYQNYPPQAQRYPSP 797
>AE014134-2318|AAN10831.1| 759|Drosophila melanogaster CG6043-PB,
isoform B protein.
Length = 759
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 204 SQPSNG-PSGNYEPISTGPAFVDFNHPNYPP--KRYDNP 311
+QP+ G P+G+ I + FVD + NYPP +RY +P
Sbjct: 684 AQPNFGAPAGHI--IRSANQFVDQGYQNYPPQAQRYPSP 720
>AE014134-2317|AAF53274.2| 759|Drosophila melanogaster CG6043-PA,
isoform A protein.
Length = 759
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 204 SQPSNG-PSGNYEPISTGPAFVDFNHPNYPP--KRYDNP 311
+QP+ G P+G+ I + FVD + NYPP +RY +P
Sbjct: 684 AQPNFGAPAGHI--IRSANQFVDQGYQNYPPQAQRYPSP 720
>AE014134-2316|AAN10830.1| 918|Drosophila melanogaster CG6043-PD,
isoform D protein.
Length = 918
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 204 SQPSNG-PSGNYEPISTGPAFVDFNHPNYPP--KRYDNP 311
+QP+ G P+G+ I + FVD + NYPP +RY +P
Sbjct: 684 AQPNFGAPAGHI--IRSANQFVDQGYQNYPPQAQRYPSP 720
>AE013599-929|AAF58897.1| 1127|Drosophila melanogaster CG1625-PA
protein.
Length = 1127
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 198 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGGK 329
F + S+G NY +++ P FV N P D P+AR K
Sbjct: 396 FANGSSDGVINNYLKVASTPPFVGKKKENVKPASAD-PIARSSK 438
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,378,043
Number of Sequences: 53049
Number of extensions: 390762
Number of successful extensions: 1600
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 859222404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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