Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P14
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    31   0.31 
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    31   0.31 
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      31   0.31 
Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    27   3.8  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    27   5.0  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   5.0  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +3

Query: 81  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIST 251
           V  +D+ P      VH  +     + GNS  +   +P+P    +P++ P+ +    P   
Sbjct: 452 VRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSVV 511

Query: 252 GPAFVDFNHPNYPPKRYDNPLARGGK 329
           GPAF     P  PP  +  P+    +
Sbjct: 512 GPAF-GKKVPEQPPVNFRKPIGASNR 536


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +3

Query: 81  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIST 251
           V  +D+ P      VH  +     + GNS  +   +P+P    +P++ P+ +    P   
Sbjct: 452 VRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSVV 511

Query: 252 GPAFVDFNHPNYPPKRYDNPLARGGK 329
           GPAF     P  PP  +  P+    +
Sbjct: 512 GPAF-GKKVPEQPPVNFRKPIGASNR 536


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +3

Query: 81  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIST 251
           V  +D+ P      VH  +     + GNS  +   +P+P    +P++ P+ +    P   
Sbjct: 452 VRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSVV 511

Query: 252 GPAFVDFNHPNYPPKRYDNPLARGGK 329
           GPAF     P  PP  +  P+    +
Sbjct: 512 GPAF-GKKVPEQPPVNFRKPIGASNR 536


>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 293
           V A P P F+ P+  P     PI  GPAF     P   P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148


>Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical
           protein C39E9.10 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 82  CTWSIITLIIIQARFTWW-TIVVFHRTA 162
           CTW    L+ +    +WW   V+ H TA
Sbjct: 229 CTWGYTALVFVSGTLSWWEPTVIQHLTA 256


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 293
           V A P P F+ P+  P     P+  GPAF     P   P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 135 DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 260
           D SG P  G          DP  +QPS GP G + P    P+
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNPSGAPPS 328


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = +3

Query: 186 NPDPFFSQP--SNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPL 314
           +P PF + P  SN         S  P F  +     PP R  +PL
Sbjct: 90  SPPPFMTSPATSNNSVSVARKTSAPPGFAQYEPDTAPPSRSTSPL 134


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 189 PDPFFSQPSNGPSGNYEPIS 248
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 189 PDPFFSQPSNGPSGNYEPIS 248
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 186  NPDPFFSQPS-NGPSGNYEPISTGPAFVDFNHPNYPPK 296
            NP P    PS NGPS   +P   GP+    N P+ P K
Sbjct: 939  NPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNK 976


>AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.4a protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 159 GNSDHVVIANPDPFFSQPSNGPSG 230
           GN D  VI N DPF    S G  G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSGG 499


>AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.5a protein.
          Length = 527

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 159 GNSDHVVIANPDPFFSQPSNGPSG 230
           GN D  VI N DPF    S G  G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSRG 499


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,214
Number of Sequences: 27780
Number of extensions: 195274
Number of successful extensions: 582
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)