Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P13
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    68   1e-12
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    28   1.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.3  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    27   2.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   4.0  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   7.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.2  

>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
 Frame = +2

Query: 332 PEDKRKIIGDVFIRI----AEQAVHDLNLQEDQVLLGQGTLRPDLIESASALCSTNAATI 499
           PE KRKIIG+ FI +    AE+ V + N + + +L  QGTL PD+IES S      + TI
Sbjct: 313 PEKKRKIIGNTFIHVFEREAERIVKETNGKVEYLL--QGTLYPDVIESISF--KGPSQTI 368

Query: 500 KTHHNDTEXXXXXXXXXXXXEPLKDFHKDEVRALGAELGLPPAMVER 640
           KTHHN               EPL++  KDEVRALG  LG+  ++V R
Sbjct: 369 KTHHN--VGGLLKDMKLKLIEPLRELFKDEVRALGELLGIEHSLVWR 413


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 592 HLILVKVFQRFHNPTPLPELTDQFSVVM 509
           H+I ++ ++RF  P  +P LTD   V M
Sbjct: 139 HVIPLEYYERFREPMTIPNLTDNERVEM 166


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 198  NWASTPRRNASHHSRLAALPYARTVLRGSRAGG 296
            N+ S P R  SHH         R   RGSR GG
Sbjct: 922  NYKSAPSRGVSHHGHGGMSGSHRGSQRGSRRGG 954


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 85  ESTLVPILQPGIHSLDAATAVELHCSL 5
           E  +  +LQPGI+ +D    + LHC L
Sbjct: 486 ELNVSTLLQPGINHVDCHDNIGLHCGL 512


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 57  GCRIGTRVDSTYAPHYSNCSPRGSSY-RTTH*YGFMR 164
           G   G+   STY+  YS+   RG SY R+T  Y   R
Sbjct: 619 GYSSGSETGSTYSSSYSSTYSRGRSYSRSTRSYSKSR 655


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 308 PLLCHAISPEDKRKIIG 358
           P+LC AI+P+ KR + G
Sbjct: 370 PILCMAITPDGKRVVTG 386


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 314  LCHAISPEDKRKIIGD 361
            +C A++ EDKR++ GD
Sbjct: 1132 VCRALADEDKRRLTGD 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,367
Number of Sequences: 5004
Number of extensions: 46949
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)