Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P13
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0213 + 14349821-14350396,14351360-14351610,14351695-143520...    63   2e-10
01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026...    30   1.8  
12_02_0139 - 14277389-14279119                                         29   4.1  
09_01_0126 + 1896155-1896253,1897425-1897969,1898303-1898384,189...    29   4.1  
07_01_0873 - 7257016-7257957,7260083-7260262                           29   4.1  
06_01_0817 - 6185881-6187074                                           28   5.4  
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    28   7.2  
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549...    27   9.5  

>08_02_0213 +
           14349821-14350396,14351360-14351610,14351695-14352070,
           14352210-14352341,14352425-14352600,14353176-14353299
          Length = 544

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
 Frame = +2

Query: 332 PEDKRKIIGDVFIRIAEQAVHDLN--LQEDQVLLGQGTLRPDLIESASALCS--TNAATI 499
           PE KRKIIG  FI + +   H L   + +    L QGTL PD+IES     S  T++ TI
Sbjct: 314 PEMKRKIIGREFIAVFDDFAHKLEQKIGKRPGYLVQGTLYPDVIESCPPPGSGRTHSHTI 373

Query: 500 KTHHNDTEXXXXXXXXXXXXEPLKDFHKDEVRALGAELGLPPAMVER 640
           K+HHN               EPLK   KDEVR LG+ L +P + ++R
Sbjct: 374 KSHHN--VGGLPKDMKLKLIEPLKLLFKDEVRKLGSILNVPESFLKR 418


>01_02_0059 -
           10701859-10701963,10702034-10702153,10702534-10702609,
           10702897-10703276
          Length = 226

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 268 RSC-GGRGRAGTSHASTLPRDFA*RQAEDHRRCLHQ 372
           R C GG GR G      +PR  A R  ++ RRC H+
Sbjct: 116 RGCWGGGGRGGWYSGVAVPRGAAARSWQEQRRCPHK 151


>12_02_0139 - 14277389-14279119
          Length = 576

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +2

Query: 308 PLLCHAISPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLGQGTLRPDLIESASA 472
           P  CH I       + G V+IR      H L  +   +  G G L   LI SAS+
Sbjct: 99  PTSCHVIRGSIPSCLAGGVYIRNGPNPQHRLPQRTHHLFDGDGMLHSLLIPSASS 153


>09_01_0126 +
           1896155-1896253,1897425-1897969,1898303-1898384,
           1898710-1898832
          Length = 282

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 7   GNNGAP-PRWRRLNYGSRAAESARGLTRRMRRITQT 111
           GN G P PR+R  + G+R A S++   R  +R++ +
Sbjct: 201 GNGGRPHPRYRSRSRGTREARSSKKTPRESKRLSSS 236


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 272 PAGVAGGRVRHTPLL-CHAISPEDKRKIIGDVFIRIAEQAVHD 397
           P+ V GG  R T ++ C   S +  R I+GD F R++E+   D
Sbjct: 178 PSPVQGGPPRLTSVVKCGDASRDRIRAILGDAFSRVSEETRKD 220


>06_01_0817 - 6185881-6187074
          Length = 397

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 102 NAAHTSSQPSCRFCSPGSIV*TPPPRWSS 16
           +AAH    P CR C   +    PPP WS+
Sbjct: 21  SAAHAGHAPLCRSCGAPTTTPVPPP-WSA 48


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 111 SLSNAAHTSSQPSCRFCSPGSIV*TPPPRWSSIVPL 4
           SLS +A     P C  C   + V   PPRW S   L
Sbjct: 348 SLSRSAPPGPPPLCSICQHKTPVFGKPPRWFSYAEL 383


>06_03_0614 -
           22753092-22753349,22754059-22754277,22754712-22754960,
           22755186-22755275,22755379-22755456,22755562-22756337,
           22757042-22757384
          Length = 670

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 329 SPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLG-QGTLRPDLIESASALCSTNAATIK 502
           +PE +R+I+GD+   + EQ V++   +   +LL    T   +L+ES   L    A  +K
Sbjct: 579 NPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMK 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,891,296
Number of Sequences: 37544
Number of extensions: 393134
Number of successful extensions: 1152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)