SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P13
         (640 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10860-1|AAA60331.1|  693|Homo sapiens guanosine 5'-monophosphat...   132   8e-31
BC012178-1|AAH12178.1|  693|Homo sapiens guanine monphosphate sy...   132   8e-31
AK223399-1|BAD97119.1|  693|Homo sapiens guanine monophosphate s...   132   8e-31
AF297747-1|AAG53900.1|  551|Homo sapiens MLL/GMPS fusion protein...    94   4e-19
M77810-1|AAA35869.1|  474|Homo sapiens transcription factor GATA...    31   2.6  
AK123974-1|BAC85739.1|  322|Homo sapiens protein ( Homo sapiens ...    30   8.0  

>U10860-1|AAA60331.1|  693|Homo sapiens guanosine 5'-monophosphate
           synthetase protein.
          Length = 693

 Score =  132 bits (320), Expect = 8e-31
 Identities = 79/187 (42%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
 Frame = +2

Query: 89  VCAALLK--LLSARIKLSHYTLIWVHA*DESLSKRCLRELGVDSTS*RFT-SFAVGSTAI 259
           VC ALL   L   ++   H    ++   +    +  L++LG+         SF  G+T +
Sbjct: 251 VCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTL 310

Query: 260 RENGPAGVAGGRVRHTPLLCHAISPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLGQGT 439
             +        R+  T  L    SPE+KRKIIGD F++IA + + ++NL+ ++V L QGT
Sbjct: 311 PISDEDRTPRKRISKT--LNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGT 368

Query: 440 LRPDLIESASALCSTNAATIKTHHNDTEXXXXXXXXXXXXEPLKDFHKDEVRALGAELGL 619
           LRPDLIESAS + S  A  IKTHHNDTE            EPLKDFHKDEVR LG ELGL
Sbjct: 369 LRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGL 428

Query: 620 PPAMVER 640
           P  +V R
Sbjct: 429 PEELVSR 435


>BC012178-1|AAH12178.1|  693|Homo sapiens guanine monphosphate
           synthetase protein.
          Length = 693

 Score =  132 bits (320), Expect = 8e-31
 Identities = 79/187 (42%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
 Frame = +2

Query: 89  VCAALLK--LLSARIKLSHYTLIWVHA*DESLSKRCLRELGVDSTS*RFT-SFAVGSTAI 259
           VC ALL   L   ++   H    ++   +    +  L++LG+         SF  G+T +
Sbjct: 251 VCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTL 310

Query: 260 RENGPAGVAGGRVRHTPLLCHAISPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLGQGT 439
             +        R+  T  L    SPE+KRKIIGD F++IA + + ++NL+ ++V L QGT
Sbjct: 311 PISDEDRTPRKRISKT--LNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGT 368

Query: 440 LRPDLIESASALCSTNAATIKTHHNDTEXXXXXXXXXXXXEPLKDFHKDEVRALGAELGL 619
           LRPDLIESAS + S  A  IKTHHNDTE            EPLKDFHKDEVR LG ELGL
Sbjct: 369 LRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGL 428

Query: 620 PPAMVER 640
           P  +V R
Sbjct: 429 PEELVSR 435


>AK223399-1|BAD97119.1|  693|Homo sapiens guanine monophosphate
           synthetase variant protein.
          Length = 693

 Score =  132 bits (320), Expect = 8e-31
 Identities = 79/187 (42%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
 Frame = +2

Query: 89  VCAALLK--LLSARIKLSHYTLIWVHA*DESLSKRCLRELGVDSTS*RFT-SFAVGSTAI 259
           VC ALL   L   ++   H    ++   +    +  L++LG+         SF  G+T +
Sbjct: 251 VCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTL 310

Query: 260 RENGPAGVAGGRVRHTPLLCHAISPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLGQGT 439
             +        R+  T  L    SPE+KRKIIGD F++IA + + ++NL+ ++V L QGT
Sbjct: 311 PISDEDRTPRKRISKT--LNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGT 368

Query: 440 LRPDLIESASALCSTNAATIKTHHNDTEXXXXXXXXXXXXEPLKDFHKDEVRALGAELGL 619
           LRPDLIESAS + S  A  IKTHHNDTE            EPLKDFHKDEVR LG ELGL
Sbjct: 369 LRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGL 428

Query: 620 PPAMVER 640
           P  +V R
Sbjct: 429 PEELVSR 435


>AF297747-1|AAG53900.1|  551|Homo sapiens MLL/GMPS fusion protein
           protein.
          Length = 551

 Score = 93.9 bits (223), Expect = 4e-19
 Identities = 58/148 (39%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
 Frame = +2

Query: 89  VCAALLK--LLSARIKLSHYTLIWVHA*DESLSKRCLRELGVDSTS*RFT-SFAVGSTAI 259
           VC ALL   L   ++   H    ++   +    +  L++LG+         SF  G+T +
Sbjct: 384 VCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTL 443

Query: 260 RENGPAGVAGGRVRHTPLLCHAISPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLGQGT 439
             +        R+  T  L    SPE+KRKIIGD F++IA + + ++NL+ ++V L QGT
Sbjct: 444 PISDEDRTPRKRISKT--LNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGT 501

Query: 440 LRPDLIESASALCSTNAATIKTHHNDTE 523
           LRPDLIESAS + S  A  IKTHHNDTE
Sbjct: 502 LRPDLIESASLVASGKAELIKTHHNDTE 529


>M77810-1|AAA35869.1|  474|Homo sapiens transcription factor GATA-2
           protein.
          Length = 474

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 78  VDSTYAPHYSNCSPRGSSYRTTH*Y---GFMRKTKV*VRGVYVNWASTPRR--NASHHSR 242
           +DS   P+Y+N + RG SY   H     G M +  + +    + W    +   +A+HH  
Sbjct: 52  LDSQGNPYYANPAQRGVSYSPAHARLTGGQMCRPHL-LHSPGLPWLDGGKAALSAAHHKT 110

Query: 243 LAALPYARTVLRGSRAGG 296
               P+++T L  S AGG
Sbjct: 111 WTVSPFSKTPLHPSAAGG 128


>AK123974-1|BAC85739.1|  322|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41980 fis, clone SMINT2007391. ).
          Length = 322

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 253 CHTRERSCGGRGRAGTSHASTLPRD 327
           C T ++S GG+G AG +HA +  R+
Sbjct: 164 CRTSQQSLGGKGGAGRTHAPSAARE 188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,177,500
Number of Sequences: 237096
Number of extensions: 2131012
Number of successful extensions: 4613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4597
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -