Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P11
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   0.40 
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    27   1.2  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   3.7  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   3.7  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   4.9  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   6.5  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   6.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.6  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 201 LSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 88
           L++ Q +++G SYVL +DP      F +  NG  R  T
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 412 GCKLASLAPWHSPSWFH 362
           GC+L+   PWH   W +
Sbjct: 268 GCELSDAGPWHEEQWMN 284


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 234 PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 338
           P  R      V W MP  + +       N+HW AP
Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 302 KTYANKCSLECTQKIIPSLKMEP*WR 379
           +T  N CS +  +K I S K  P WR
Sbjct: 589 QTGKNNCSFQLVKKRIKSTKKAPSWR 614


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +1

Query: 217 DNREKHRMRGGHPLLLY-------LGICP 282
           DNR+   +R G P++LY       +G+CP
Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 123 EKSIVPSAGQMVRRTRTRVN--FTAKRTRHTA--I*QS*KTPHARWASPATVPWNMPPSV 290
           EK++ P        T   +   F+ KR R     + +  K+P  + ASP     N+ PS+
Sbjct: 69  EKALTPDLRDTKIHTSLPITTPFSKKRAREAKNILLKPFKSPLRQTASPQVADTNLKPSL 128

Query: 291 ALT 299
           A+T
Sbjct: 129 AVT 131


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 202 DTQQYDNREKHRMRGGHPLL 261
           D   Y NR   +MRG  PLL
Sbjct: 94  DNPYYKNRPPQKMRGNKPLL 113


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
 Frame = +2

Query: 140 VCGSDGKTYENPCEFYCEKDKTHSNMTIVK----NTACEVGIPCYCTLEYAPVCGSNGK- 304
           +C  DG+  E+ C+  C K + +              C+  IPC   LE +  CG   K 
Sbjct: 716 LCHPDGEC-ESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCECGRIRKK 774

Query: 305 -----TYAN-------KCSLECTQK 343
                +Y N        C+LEC+Q+
Sbjct: 775 VTCDASYDNPDPQHKVSCTLECSQQ 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,989
Number of Sequences: 5004
Number of extensions: 43994
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)