Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P11
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0379 + 43177978-43178572,43178643-43178674                       34   0.055
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419           29   2.1  
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    29   2.1  
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979     28   2.7  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           28   3.6  
12_01_0415 + 3292576-3293727                                           27   4.8  
09_01_0053 + 873918-874411,875255-875492,875682-875702                 27   6.3  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   6.3  
02_02_0447 + 10363077-10363245,10363419-10363519,10363947-103641...    27   8.3  

>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 33.9 bits (74), Expect = 0.055
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 221 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 105
           L Y C  C FR+    T S+T +HL  R +YR++  Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196


>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
          Length = 528

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 388 PWHSPSWFHLQRRYNLLGAF 329
           P+  PSW+HLQ  Y LL  F
Sbjct: 190 PFFDPSWYHLQAVYELLLRF 209


>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 158 YHLTRRRDYRFFRKYITAVAELLPSIL 78
           YHL R  DY ++R+++  V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890


>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
          Length = 158

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 299 R*SHRRGHIPRYSSRGCPPRMRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTRRRD 135
           R S RR  +   S+    P +  + RL  CC++    S +  G     H  +RRD
Sbjct: 43  RESRRRCALGGASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 388 PWHSPSWFHLQRRYNLLGAF 329
           P+  PSW+HLQ  Y LL  F
Sbjct: 159 PFFDPSWYHLQVVYELLLRF 178


>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 108 GGGRAVTEYISAAAIRRIPSLFILC 34
           GGG    E +S A IRR+   FILC
Sbjct: 38  GGGGGGEEILSVAWIRRLLEAFILC 62


>09_01_0053 + 873918-874411,875255-875492,875682-875702
          Length = 250

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 HARWASPATVPWNMPPSVALTEKLTPT 317
           HA+W+  ATV +   P + + E+L  T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -1

Query: 401 RQFSSLAFAIMVPSSETV*SFGCIPVN--ICWRKFFR*SHRRGHIPRYSSRGCPPRMRCF 228
           R FS   F         V +  CI VN  I W  F      + H+   ++ G PP M C 
Sbjct: 262 RSFSRQLFLSPFLLETFVAALRCIYVNPLIDWVHFSLLRAMKSHLEDLANEGDPPAMHCI 321

Query: 227 SRLSY 213
             L++
Sbjct: 322 RNLNW 326


>02_02_0447 +
           10363077-10363245,10363419-10363519,10363947-10364140,
           10364223-10364634
          Length = 291

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 110 TAVAELLPSILAQRRS--EEYRVYSFCV 33
           ++V +L  S LA+ R   +EYR+Y++CV
Sbjct: 247 SSVCQLSDSELARMRKVQDEYRIYNYCV 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,922
Number of Sequences: 37544
Number of extensions: 308097
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)