Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P11
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              35   4e-04
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   2.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   5.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 34.7 bits (76), Expect = 4e-04
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 263 CTLEYAPVCGSNGKTYANKCSL 328
           C   + PVC SNGK YAN C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131



 Score = 33.5 bits (73), Expect = 0.001
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 119 CGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKN 232
           C + + PVC S+GK Y N CE +  +   HS  ++ K+
Sbjct: 110 CPRRHRPVCASNGKIYANHCELH--RAACHSGSSLTKS 145


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 335 CIPVNICWRKFFR*SHRRGHIPRYSSRGCPP 243
           C+  +I W KF +    R   P Y   G  P
Sbjct: 41  CVGDDIAWMKFDKEGRLRAINPEYGFFGVAP 71


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 119 CGKIYSPVCGSDGKTYENPCEFYCEKDKT 205
           C   Y      DG +Y N  E  C +D++
Sbjct: 230 CHSRYEDSRHEDGNSYRNDGERSCSRDRS 258


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 122 RKYITAVAELLPSILAQRRSEEYRVYSFCV 33
           RK  T    ++ S   Q++SEE  +   CV
Sbjct: 795 RKTATTTQPVISSRKEQKKSEEKNINDHCV 824


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 108 GGGRAVTEYISAAAIRRIPSLFILCLNINGTNLEF 4
           G G  V  ++S  ++R   +LF++ L I+   + F
Sbjct: 69  GNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMF 103


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/26 (26%), Positives = 11/26 (42%)
 Frame = +2

Query: 254 PCYCTLEYAPVCGSNGKTYANKCSLE 331
           PCYCT E   +  +  +       L+
Sbjct: 1   PCYCTCEKCKITANRQQVMRQNMKLK 26


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 105 RRYVFAEKSIVPSAGQM 155
           RR +FA + ++ SAG +
Sbjct: 308 RRIIFARREVILSAGSV 324


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 278 APVCGSNGKTYANK 319
           A +CG+ G +YA +
Sbjct: 12  AAICGAQGASYAGR 25


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 278 APVCGSNGKTYANK 319
           A +CG+ G +YA +
Sbjct: 12  AAICGAQGASYAGR 25


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -2

Query: 424 VHIHGCKL 401
           +H+HGCK+
Sbjct: 97  LHVHGCKV 104


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 108 GGGRAVTEYISAAAIRRIPSLFILCLNIN 22
           G G  V  ++S  ++R   +LF++ L I+
Sbjct: 35  GNGMVVYIFLSTKSLRTPSNLFVINLAIS 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,341
Number of Sequences: 438
Number of extensions: 3084
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)