Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P10
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    55   4e-09
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   2.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   2.6  
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    24   6.0  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   7.9  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 54.8 bits (126), Expect = 4e-09
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = -2

Query: 279 FVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILDRR 145
           F++ IER+ REKANGAS  VGI  SK VI KL ++KDRK ++ R+
Sbjct: 77  FLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 144 LCDPGLFYGLYSSLTSQSHTLKGGYRRTHWLHWLSHAGSFRCRLQTSYGTPVLLC 308
           LC+ G+F+GLYS +      L G    T  L + S+  + R  L ++Y  P  LC
Sbjct: 63  LCEEGVFHGLYSGVCPM---LIGSLPATA-LFFSSYEYTKR-HLMSNYNLPETLC 112


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 214  DTDVHTGSIGFLTLDPFDVDYKLLTV 291
            DT ++  SIG LT  P +++ KLLT+
Sbjct: 1051 DTLLYAKSIGLLTFLPNELNQKLLTL 1076


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 203 FEGWIPTYTLAPLAFSRWILS 265
           F  W+P Y+ + + F  W+L+
Sbjct: 123 FLSWVPFYSTSKIVFWLWLLN 143


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 262 FDVDYKLLTVHLYYFAHLLAFIMSSYN 342
           +D+  K  TV L + +HL A I SSY+
Sbjct: 240 YDISRKDPTVGLSFSSHLNAMIDSSYS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,842
Number of Sequences: 5004
Number of extensions: 21522
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)