Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P05
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    29   0.27 
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    27   1.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   1.9  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   1.9  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    27   1.9  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   4.4  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.7  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    25   7.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.7  

>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 73  AVQIQEAYA-YKMNVNFLASGANNVGVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVP 249
           ++Q+Q  Y    ++ N L         G   S I+S K G  I +     TT+L  ++ P
Sbjct: 86  SMQVQRPYTPLYLDANELKFFIRKYEEGPVSSYIHSKKEGDTIELRGPFKTTKLDCTKYP 145

Query: 250 KVPGQVSGESYPGPIY 297
           ++   V+G     PIY
Sbjct: 146 RIVAIVAGTGI-APIY 160


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 58  LPYLTAVQIQEAYAYKMNVNFLASGANNVGVGSAGSGIYSGKAGSLIS 201
           +PYL   Q Q+++  + N+    S  NN+     G      K  +LI+
Sbjct: 277 IPYLVKCQYQKSFTVRENIQRFLSSPNNIDNYDGGLSSQEIKINALIA 324


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +2

Query: 215 FQLHGYLSQEYLKFQGRYLENHTQVQSTITRRIMXXXXXXXXXXXXXXSADLWYRDPKSL 394
           F +H Y+ Q  LKFQ +  E+H   +  +   ++              + +L Y DPK L
Sbjct: 677 FYVHPYIKQGILKFQSK--ESHKFRKKEVWSTVLAVLQRDVFTLYNLNTPNLSY-DPKDL 733

Query: 395 H*WIKMSAAILKSDSTKPEATPF 463
               K+   ++K+      A PF
Sbjct: 734 D-ISKVGKPVIKTTIIASLAKPF 755


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 213 SWHDADQRTCFTGIYSRTCRSDTNVIGPRSQKVHVHFVRIC 91
           S+ D      +T  +SRT R +   + P+S  + V + RIC
Sbjct: 385 SYSDLRFELLYTESHSRTLRHEKRHVSPKSPLIDVCWWRIC 425


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 265 VSGESYPGPIYDNPSDHDGLRLITDPSLVSHISRPLVQGSQEF 393
           +SG   P P+  NPSD D +   T+  L  H     ++    F
Sbjct: 69  LSGVEEPVPVESNPSDQDVMSNSTEADLQLHTKNEHLEKRHSF 111


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 136 NNVGVGSAGSGIYSGKAGSLIS 201
           NN+G GSAGSG++S   G+ +S
Sbjct: 286 NNMG-GSAGSGVWSSCFGNSLS 306


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 186 CFTGIYSRTCRSDTNVIGPRSQKVHVHF 103
           C   ++   CRS +N +GPR Q   V F
Sbjct: 103 CKHALFVDKCRSISNKLGPREQVYLVGF 130


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 105 NERELSGFWGQ*RWCRICRFGNIFR*SRFFDQHH 206
           +E   S   G+ RW +  RFGNI    + F +HH
Sbjct: 110 SEIRASSMSGECRWTKELRFGNI----KTFRKHH 139


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 184 LYRNIFPNLQIRHQRYWPQKPES 116
           L+R+++ N  +  Q YWP  PES
Sbjct: 491 LHRDLYVN--VLSQAYWPSYPES 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,898
Number of Sequences: 5004
Number of extensions: 47985
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)