Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P05
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   3.9  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    27   5.1  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    27   6.8  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    27   6.8  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    27   6.8  
AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF077540-4|AAY55876.1|  111|Caenorhabditis elegans Hypothetical ...    27   9.0  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    27   9.0  

>AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical
           protein Y57E12B.4 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 23/90 (25%), Positives = 31/90 (34%)
 Frame = -2

Query: 380 PCTKGLLMCDTKDGSVINLRPS*SDGLS*IGPGYDSPDTCPGTLGTLETSNRVVGTPGMM 201
           PC       DT    V +  P  +   S     +   D+      T  TS     TP + 
Sbjct: 156 PCATSPAEIDTTTPQVSSSEPFTTSENSSTAEPFAPSDSTTSINETQTTSTHAETTPEIH 215

Query: 200 LIKEPALPEYIPEPADPTPTLLAPEARKFT 111
             ++PA  E    P D  PT L  E +  T
Sbjct: 216 YTEKPATLEPSKAPTDDCPTTLVVENKTLT 245


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 287 PGYDSPDTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEPADPTPTLLAPEARK 117
           PG  +P + PG+  ++ T  +V G PG     +P     +P+P    P     E RK
Sbjct: 370 PG-SAPSSRPGSSMSIGTPTKVKGLPGRPKKPKPEGVVTVPKPKGRPPKKATLEKRK 425


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 145 GVGSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESYPGP 291
           G G AGSG  S ++    SI+P  PT  +  S VP  P        P P
Sbjct: 427 GYGGAGSGASSTESKE--SIVPPEPTPSMQESPVPNAPQVKMEPEKPSP 473


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 266 TCPGTLGTL-ETSNRVVGTPGMMLIKEPALPEYIPEPADPTPTL 138
           T P T  TL +T + V  TP   L    +    +P+PA+ TPTL
Sbjct: 505 TTPATAATLGQTPSTVSATPS--LPTTTSTTSTLPKPAEATPTL 546


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 220 TTRLLVSRVPKVPGQVSGESYPGPIYDNPSDHDGLRLITDPSLV 351
           T   L + +P +   +   ++PG IY+N +D DG    +D  L+
Sbjct: 819 TATTLTTTIPLI--DLQNGNHPGQIYENDNDDDGSSTSSDEILL 860


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 SRVPKVPGQVSGESYPGP 291
           S  P VPGQ  G S PGP
Sbjct: 187 SGAPGVPGQTGGASLPGP 204


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = -2

Query: 287 PGYDSPDTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEPADPTP 144
           PG   P   PG  G         G PG   I EP  P    EP D  P
Sbjct: 182 PGSPGPRGPPGPAGEAGAPGPA-GEPGTPAISEPLTPGAPGEPGDSGP 228


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = -2

Query: 287 PGYDSPDTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEPADPTP 144
           PG   P   PG  G         G PG   I EP  P    EP D  P
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPA-GEPGTPAISEPLTPGAPGEPGDSGP 223


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = -2

Query: 287 PGYDSPDTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEPADPTP 144
           PG   P   PG  G         G PG   I EP  P    EP D  P
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPA-GEPGTPAISEPLTPGAPGEPGDSGP 223


>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +1

Query: 199 SIMPGVPTTRLLVSRVP-----KVPGQVSGESYPG 288
           S +PG+ + R+ VSRVP     +VPG + G  +PG
Sbjct: 432 SRVPGIQSFRVQVSRVPGFQGARVPG-IQGSRFPG 465


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 151 GSAGSGIYSGKAGSLISIMPGVPTTRLLVSRVPKVPGQVSGESYPGP 291
           G++G+    G+AG+     PG P        +P  PGQ   +  PGP
Sbjct: 192 GASGAPGNPGQAGA-----PGQPGADAQSESIPGAPGQAGPQGPPGP 233


>AF077540-4|AAY55876.1|  111|Caenorhabditis elegans Hypothetical
           protein T07H3.7 protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 269 DTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEP-ADPTPTLLAP 129
           DT PG+ GT  T      TP    + +P  P  + +P  +P  T +AP
Sbjct: 40  DTTPGSPGTSATD----ATPTDSPVTQPTEPSTVTDPVTEPVTTPMAP 83


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = -2

Query: 287 PGYDSPDTCPGTLGTLETSNRVVGTPGMMLIKEPALPEYIPEPADPTP 144
           PG   PD  PG  GT  TS    G PG      PA P      A P+P
Sbjct: 215 PGAPGPDGQPGAGGT--TSTNQPGPPGPAGPPGPAGPAGEDAYAQPSP 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,579
Number of Sequences: 27780
Number of extensions: 280574
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)