Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_P02
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936           29   2.9  
10_01_0133 + 1621574-1625779                                           28   6.6  
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204     28   6.6  
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526...    28   8.7  

>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
          Length = 838

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 223 VSMHCSLRDFISFFRTSWVSVLGSFDVMLI 134
           +SM CS++ FI FF   W+ ++ +F   L+
Sbjct: 437 LSMMCSMKAFIFFFFAIWIVIMAAFVFWLL 466


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 423 TAFTRGLVH--DFDNEIRNLREQIRVA 497
           T+ T GL H  +F  EIRNL+EQI VA
Sbjct: 585 TSDTVGLDHYQNFKEEIRNLKEQISVA 611


>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
          Length = 546

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 150 NEPNTETQEVLKNEIKSLKEQCIDTCNVINNIPQVASTSNEDEAAER 290
           N P T  + +LK EI  LKE+  ++     + P  AS  + ++ +E+
Sbjct: 390 NRPETNEERILKEEINLLKEKLKESEANKTDGPDQASPEDPEDLSEK 436


>01_07_0050 -
           40751994-40752086,40752193-40752300,40752501-40752667,
           40752756-40752882,40752984-40753145,40753674-40753837,
           40753931-40754024,40754160-40754284,40754387-40754532,
           40754676-40754764,40755524-40755589,40755990-40756148
          Length = 499

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 118 FSTVHRYLMKXNITIHCLQNECRTINWVSFD 26
           F  V RY    N T+HC     + +N  SF+
Sbjct: 90  FDVVERYSTDSNKTLHCTTKTSKCLNLASFN 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,860,720
Number of Sequences: 37544
Number of extensions: 302152
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)