Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_O23
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 28 1.9
AF016425-6|AAY86242.1| 104|Caenorhabditis elegans Hypothetical ... 28 2.5
Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical pr... 27 5.9
U10401-5|AAA19060.1| 238|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF025466-2|AAB71033.1| 261|Caenorhabditis elegans Hypothetical ... 27 5.9
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 26 7.8
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 26 7.8
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 26 7.8
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 26 7.8
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 171 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 254
CT CQ HL+C G + W SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281
>AF016425-6|AAY86242.1| 104|Caenorhabditis elegans Hypothetical
protein F59A7.11 protein.
Length = 104
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 43 LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 201
L++ LL + V+ PG + ED + R RR G TV +DG++
Sbjct: 4 LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56
>Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical
protein ZK666.7 protein.
Length = 403
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 271 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 372
L +MK+ A A +AY DNVNG L++ PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215
>Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical
protein F46F2.3 protein.
Length = 137
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 132 GAVGQLQGAPASGCTNCQLRR 194
G +G L GAPA GC C R
Sbjct: 22 GGLGGLFGAPAGGCDPCAAAR 42
>U10401-5|AAA19060.1| 238|Caenorhabditis elegans Hypothetical
protein T20B12.7 protein.
Length = 238
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 138 VGQLQGAPASGCTNCQLRRHLRC 206
+GQ+ P S C NC L RC
Sbjct: 191 MGQIAAEPKSSCGNCSLGDAFRC 213
>AF025466-2|AAB71033.1| 261|Caenorhabditis elegans Hypothetical
protein T23F4.1 protein.
Length = 261
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 222 YNWKRKSQAQCPW 260
Y WKRKS+++C W
Sbjct: 91 YLWKRKSRSRCEW 103
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 130 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 309
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 68 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 127
Query: 310 LAYDNVNG 333
L YD + G
Sbjct: 128 LPYDPMTG 135
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 130 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 309
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325
Query: 310 LAYDNVNG 333
L YD + G
Sbjct: 326 LPYDPMTG 333
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 130 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 309
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 334 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 393
Query: 310 LAYDNVNG 333
L YD + G
Sbjct: 394 LPYDPMTG 401
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 130 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 309
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325
Query: 310 LAYDNVNG 333
L YD + G
Sbjct: 326 LPYDPMTG 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.130 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,901,456
Number of Sequences: 27780
Number of extensions: 169356
Number of successful extensions: 369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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