Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_O22
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 221 6e-59
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 27 2.7
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 2.7
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 26 3.5
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 4.7
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.2
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 25 6.2
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 6.2
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 8.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 8.1
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 221 bits (540), Expect = 6e-59
Identities = 98/157 (62%), Positives = 127/157 (80%)
Frame = +3
Query: 111 ISKPAPEWEATAVLNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRK 290
I KPAP+++ TAV+NG F ++ L+ +KGK++ FYPLDFTFVCPTEI+AFSE +F +
Sbjct: 5 IGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAE 64
Query: 291 INTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLR 470
N +V+ S DS ++HLA+INTPRKEGGLG INIPLL+D +H +++DYGV +ED G R
Sbjct: 65 RNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFR 124
Query: 471 GLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQY 581
GLF+ID KG+LRQIT+NDLPVGRSVDE LRL+ AFQ+
Sbjct: 125 GLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQF 161
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/100 (24%), Positives = 40/100 (40%)
Frame = +3
Query: 222 LDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLL 401
LD ILA +R+ + ++ S+D+ + W +TP + +
Sbjct: 634 LDVIMEANEVILAIQSSALAYRRESQKIYKLSIDTFGEEVPWTSTPET-----LVLLCRQ 688
Query: 402 SDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQITMN 521
+LT S D+ +T F I DKG+LR + N
Sbjct: 689 FELTRSALVQSHQGTSDVENT----FKIKDKGVLRNVVSN 724
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 259 AKISVGQTNVKSKG*KKNTKYFPLKLDSDNCVNSPFSTAVASHSGAGFDIMALVNCS 89
AK NVK+ N+K++ D + N P S H GAG++ + + C+
Sbjct: 44 AKCKTEFQNVKAICRTYNSKFYMGIFDKEIIDNLPPSVKFICHLGAGYETVDVAACT 100
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 366 EGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLF 479
+ G+G I ++ L HS KD V+ E L T LF
Sbjct: 274 QSGIGNIANAIIGGLAHSPFKDLEVWTEVLQDTFLPLF 311
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 51 NVFPGGARKIDHKLQFTKAMISKPAPEWEATAVLNGEFTQLSLSSFKGKYLVF 209
+ F ID+ ++TKA + KP E + + S +FKG +F
Sbjct: 18 HAFASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIF 70
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 61 LVEQEKLITNYNSLKP*YRSRRPNGKQLQY 150
++E++K I Y + +P YR NGK+++Y
Sbjct: 176 ILEEKKKIPLYPNGQPKYRKILENGKKVKY 205
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 390 IPLLSDLTHSIAKDYGVYLEDL 455
I L+ D+ + ++K +G+Y EDL
Sbjct: 468 IELIDDIRYFLSKRFGIYHEDL 489
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 120 PAPEWEATAVLNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTE 251
P P +E + +G+F S + K K + YP TF TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 219 PLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAW 347
PL F E+L F + + + C +D HF HL++
Sbjct: 253 PLGKYFTTEDEVLNFRRKTYHALVVFLFLPVCCLDPHFLHLSF 295
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 8.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -2
Query: 90 VCDQFFLLHQEKHFHFQKNNKNHFQITTI 4
+CD++ +E HF F + ++ I T+
Sbjct: 555 ICDEYVKRFKEDHFSFMFKKEENYAIITL 583
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,312
Number of Sequences: 5004
Number of extensions: 56286
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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