Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O22
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...   111   5e-25
06_01_0671 - 4899611-4899829,4900870-4901448                           70   1e-12
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700...    64   8e-11
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    55   5e-08
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080     42   4e-04
01_01_0942 + 7428384-7429536,7429623-7430335                           29   2.1  
05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411     28   6.3  

>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score =  111 bits (266), Expect = 5e-25
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = +3

Query: 330 FTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQ 509
           F+HLAW+ T RK GGLG +  PL+SD+T SI+K +GV + D G  LRGLFIID +G+++ 
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271

Query: 510 ITMNDLPVGRSVDETLRLVQAFQY 581
            T+N+L +GRSVDET+R +QA QY
Sbjct: 272 STINNLAIGRSVDETMRTLQALQY 295



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +3

Query: 108 MISKPAPEWEATAVLNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEF 284
           ++   AP+++A AV + EF  + LS + GK Y++ FFYPLDFTFVCPTEI AFS+R +EF
Sbjct: 69  LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128

Query: 285 RKINTEVVACSVDS 326
            K+NTE++  S+DS
Sbjct: 129 EKLNTEILGVSIDS 142


>06_01_0671 - 4899611-4899829,4900870-4901448
          Length = 265

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
 Frame = +3

Query: 171 LSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWI 350
           +SLS FKG+ +V +FYP D T  C  +  AF +  E+F+K   EV+  S D   +H  + 
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195

Query: 351 NTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRG--LFIIDDKGILRQITMND 524
              +K+    K+   LLSD  + + K++GV   DL  TL G   +++D  G+++ I  N 
Sbjct: 196 ---KKK---YKLPFTLLSDEGNKVRKEWGV-PADLFGTLPGRQTYVLDKNGVVQYIYNNQ 248

Query: 525 LPVGRSVDETLRLVQA 572
               + + ETL+++Q+
Sbjct: 249 FQPEKHIGETLKILQS 264


>04_03_0889 +
           20568984-20569037,20569271-20569345,20569981-20570088,
           20572066-20572179,20572393-20572509
          Length = 155

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 28/49 (57%), Positives = 39/49 (79%)
 Frame = +3

Query: 435 GVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQY 581
           GV ++ +G  LRGLFIID +G+++  T+N+L +GRSVDETLR +QA QY
Sbjct: 73  GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 121



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 24/46 (52%), Positives = 28/46 (60%)
 Frame = +3

Query: 234 FVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEG 371
           FV   EI AFS+R EEF KINTEV+  S+DS    L  +    KEG
Sbjct: 48  FVSSAEITAFSDRYEEFEKINTEVLGVSIDSVGIALRGLFIIDKEG 93


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
 Frame = +3

Query: 150 LNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDS 326
           L+    ++ +  F G  Y++ F +P DFT VC TE+ A +   +EF K   +++  S D 
Sbjct: 50  LDSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDD 109

Query: 327 HFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDL-----GH-TLRGLFIID 488
             +H  WI          ++  P+++D +    K   +   D      GH   R L I+ 
Sbjct: 110 VQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVG 169

Query: 489 DKGILRQITMNDLPVGRSVDETLRLVQAFQ 578
               ++   +    VGR++DE +R V A Q
Sbjct: 170 PDKKVKLSFLYPACVGRNMDEVVRAVDALQ 199


>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
          Length = 220

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 168 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 344
           ++ L  F G  Y++ F +P DFT VC TE+   +    EF K   +++  S D   +H  
Sbjct: 21  KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80

Query: 345 WINTPRKEGGLGKINIPLLSD 407
           WI          ++  P+++D
Sbjct: 81  WIKDIEAYKPGRRVGFPIVAD 101


>01_01_0942 + 7428384-7429536,7429623-7430335
          Length = 621

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 316 EHATTSVFIFLNSSILSENAKISVGQTNVKSKG-*KKNTKYFPLKLDSDNCVNSPFSTAV 140
           EH+   V I++ + + +EN KI   +TN+   G     T     +   DN   + F TA 
Sbjct: 326 EHSRRRVVIYVKAGVYTENVKIGSKKTNLMLVGDGAGKTVVVGYRSVHDN--YTTFHTAT 383

Query: 139 ASHSGAGF 116
            + +GAGF
Sbjct: 384 LAVAGAGF 391


>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
          Length = 220

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 81  DHKLQFTKAMISKPAPEWEATAVLNGEFTQLSLSSF--KGK-YLVFFFYP 221
           DH ++FT A I +P    + T + N   T +++     +GK YLV   YP
Sbjct: 114 DHDMRFTYASIGQPGSMHDTTVLFNALETDIAIFPHPPQGKYYLVDVGYP 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,661
Number of Sequences: 37544
Number of extensions: 320157
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)