Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_O16
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 93 4e-20
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 82 5e-17
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 60 3e-10
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.70
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 29 0.70
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 1.2
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 5.0
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 26 5.0
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 26 5.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.7
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 92.7 bits (220), Expect = 4e-20
Identities = 49/158 (31%), Positives = 84/158 (53%)
Frame = +1
Query: 127 TEKTFIVHGVDDDFRSDGRSNIDYRPMELETDVVSHASGSARLQLANTDILVGVKTEIDV 306
T + ++ H ++ D RSDGRS ++R + + + +S A+GSA ++ + G+K EI
Sbjct: 21 TPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAE 80
Query: 307 PNLDKPDQGKIEFFVDCSANATPEFEGRGGEQLASSIANMMQRAYHSSQALNLKQLCILE 486
P + P++G I ++ S + +F+ LA ++ + + S +NL+ LCI E
Sbjct: 81 PFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFE 140
Query: 487 GKQCWKLYVDILILELGGNLFDAVSLAVKAALFNTRIP 600
K W LY DI+ L G+ FD A+ AAL ++P
Sbjct: 141 KKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLP 178
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 82.2 bits (194), Expect = 5e-17
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Frame = +1
Query: 121 SNTEKTFIVHGVDDDFRSDGRSNIDYRPMELETDVVSHASGSARLQLANTDILVGVKTEI 300
S K F+++ ++ R DGR D+R +E++ G + +T ++ + TEI
Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQ---FGKEYGQVDVSFGHTRVMARITTEI 64
Query: 301 DVPNLDKPDQGKIEFFVDCSANATPEFE-GRGGEQLASSIANMMQRAYHSSQALNLKQLC 477
P D+P G + + A FE GR +Q I+ ++++A S AL+ + LC
Sbjct: 65 TKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQ-EIVISRLIEKAVRRSNALDTESLC 123
Query: 478 ILEGKQCWKLYVDILILELGGNLFDAVSLAVKAALFNTRIP 600
I+ G++CW + + + GNL DA +AV AAL + R P
Sbjct: 124 IISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRP 164
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 59.7 bits (138), Expect = 3e-10
Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 4/172 (2%)
Frame = +1
Query: 97 IQMAGPLLSNTEKTFIVHGVDDDFRSDGRSNIDYRPMELETDVVSHASGSARLQLANT-D 273
+Q++ P LS T K+ + + R+DGRS RP+ + DV+ +GSAR++ A++ +
Sbjct: 1 MQLSLPELSYTHKS--ITEFEPAIRNDGRSIDQLRPLSGQVDVLPGTNGSARVKWASSVE 58
Query: 274 ILVGVKTEIDVPNLDKPDQGKIEFFVDCSANATPEFEGRGGEQLASSIANMMQRAYHSSQ 453
I++GVK E+ P+ GK V+ S + + + R +++ S + + +Q +
Sbjct: 59 IVIGVKAEVGDAT---PEGGKYVASVEISPSVS--IQNRETDEIPSFLTSALQDLLN--- 110
Query: 454 ALNLKQLCILEGKQCWKLYVDILILELGG---NLFDAVSLAVKAALFNTRIP 600
AL + L K W ++VD +++ N+ A+SLA AL TR+P
Sbjct: 111 ALAVDYLKFTPSK-AWIIHVDAVVILSSSPYENILSALSLAAYLALQTTRLP 161
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 185 DLPSERKS-SSTP*TINVFS-VLLSKGPAICMNVRSVLIYICLI 60
D+PS S SSTP +I++ + +SKG I +RS +Y+ +I
Sbjct: 46 DIPSVTSSGSSTPSSISIEKEIKISKGNVIVKAIRSWSLYVAII 89
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 28.7 bits (61), Expect = 0.70
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +1
Query: 112 PLLSNTEKTFIVHGVDDDFRSDGRSNIDYRPMELETD---VVSHASGSARLQLANT-DIL 279
P SNTEK+ ++ + + D SN+ RP E + D + S +G+ Q +T +
Sbjct: 50 PEQSNTEKSIEINDKNLEAEKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSEAP 109
Query: 280 VGVKTEIDVPNLDKPDQGKI 339
+K ++ N + GK+
Sbjct: 110 QDLKIWKNISNASNQNSGKL 129
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 156 DTVNNKCFFCVTK*RPRHLYERTFCAN 76
D + CF C T+ R YE T CAN
Sbjct: 77 DPSKHLCFICTTEKIKREDYELTLCAN 103
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 514 DILILELGGNLFDAVSLAVKAALFNTR 594
++LI +LGG FD L ++ +F +
Sbjct: 192 NVLIFDLGGGTFDVSLLTIEEGIFEVK 218
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 160 DDFRSDGRSNIDYRPMELETDVVSHASGSARLQLANTDIL 279
+ R+DGR + R + + +GSA ++L NT +L
Sbjct: 10 EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVL 49
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 514 DILILELGGNLFDAVSLAVKAALFNTR 594
++LI +LGG FD L ++ +F +
Sbjct: 192 NVLIFDLGGGTFDVSLLTIEEGIFEVK 218
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 259 LANTDILVGVKTEIDVPNLDKPDQGKIEFFVDCSAN 366
L N D V V T + P+ D PD G++ F S N
Sbjct: 763 LMNDDKRVVVGTGFNFPDQDAPDSGRLMVFEMTSDN 798
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 444 MVSSLHHISYTAC*LFTSSTFKLRCSICRTV 352
+V+ +H S+T+ F SS L +ICR +
Sbjct: 683 LVNCFNHTSFTSLLSFLSSNIVLSQAICRRI 713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,335
Number of Sequences: 5004
Number of extensions: 50265
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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