Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_O16
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 73 1e-13
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 67 9e-12
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 57 1e-08
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 36 0.033
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 36 0.033
04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099 31 0.71
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 29 2.9
03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551... 29 2.9
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 28 5.0
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 28 5.0
09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474... 28 6.7
04_03_0821 - 20030123-20030250,20030551-20030815,20030912-20032081 28 6.7
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438... 28 6.7
06_03_0488 - 21361131-21361226,21361922-21362124,21362252-213624... 27 8.8
04_01_0319 - 4291144-4293402 27 8.8
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 73.3 bits (172), Expect = 1e-13
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Frame = +1
Query: 241 GSARLQLANTDILVGVKTEIDVPNLDKPDQGKIEFFVDCSANATPEFE-GRGGEQLASSI 417
GSA +QL +T ++ ++ P D+P++G + F + S A P FE GR GE A +
Sbjct: 74 GSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGES-AIEL 132
Query: 418 ANMMQRAYHSSQALNLKQLCILEGKQCWKLYVDILILELGG--NLFDAVSLAVK 573
++ R S+A++++ LC++ GK W + VD+ IL+ GG N+ DA+ L+++
Sbjct: 133 GRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLR 186
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 67.3 bits (157), Expect = 9e-12
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Frame = +1
Query: 139 FIVHGVDDDFRSDGRSNIDYRPMELETDVVSHASGSARLQLANTDILVGVKTEIDVPNLD 318
F+ + + R D R + RP + VS A GSA ++L +T +L +K E+ P+ +
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 319 KPDQGKI--EFFVD--CSANATPEFEGRGGEQLASSIANMMQRAYHSSQALNLKQLCILE 486
PD+G I EF + CS P GR E +A I+ ++ SS LNLK+LC++
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRP---GRPAE-VAPVISKNLEDILMSSGMLNLKELCLIS 145
Query: 487 GKQCWKLYV 513
GK W Y+
Sbjct: 146 GKASWLAYL 154
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +1
Query: 385 GRGGEQLASSIANMM--QRAYHSSQALNLKQLCILEGKQCWKLYVDILILELGGNLFDAV 558
G + + + N++ ++ A++L L +++GK CW LY+D L++ GNL DA+
Sbjct: 302 GWSSDDASGEVINLLIFKKTLMKRAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDAL 361
Query: 559 SLAVKAALFNTRIPCV 606
+ A+K AL +T IP V
Sbjct: 362 AAAIKVALSDTGIPKV 377
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 289 KTEIDVPNLDKPDQGKIEFFVDCSANATPEFEGRGGEQLASSIANMMQRAYHSSQALNLK 468
+ E+ P++ PD+GK+ FVDCS A P FEGRG E+ ++ + +QR
Sbjct: 153 QAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQR----------- 201
Query: 469 QLCILEGKQCWKLYVDILILE-LGGNLFDAVSLAVKAALFN 588
C+L GK ++V LE +GG L +AV + N
Sbjct: 202 --CLLGGKSGAVVFVSWYFLESMGGGLVGIERIAVNLLVGN 240
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 169 RSDGRSNIDYRPMELETDVVSHASGSARLQLANTDILVGVKTEIDVPN-LDKPDQGKIEF 345
R+DGRS D RP ++T + ASGSA + T ++V V + + D G++
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 346 FVDCSANATPEFEGRG 393
V + ATP G+G
Sbjct: 101 NVSYTTFATP-IRGQG 115
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 169 RSDGRSNIDYRPMELETDVVSHASGSARLQLANTDILVGVKTEIDVPN-LDKPDQGKIEF 345
R+DGRS D RP ++T + ASGSA + T ++V V + + D G++
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 346 FVDCSANATPEFEGRG 393
V + ATP G+G
Sbjct: 99 NVSYTTFATP-IRGQG 113
>04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099
Length = 292
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -1
Query: 104 ICMNVRSVLIYICLIL-WDFKIVNFF 30
IC N+ L+ +CLI+ W+FK++ FF
Sbjct: 267 ICSNLMISLLQMCLIMNWEFKLLQFF 292
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 154 VDDDFRSDGRSNIDYRPMELETDVVSHASGSARLQLANTDILVGV 288
V+ RSDGRS + RP+ + ++ A GSA T L V
Sbjct: 406 VEGGKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVV 450
>03_06_0175 +
32152428-32153423,32153692-32153889,32154942-32155121,
32156224-32156481,32157310-32157381
Length = 567
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = +1
Query: 307 PNLDKPDQGKIEFFVDCSANATPEFEGRGGEQLASSIANMMQRAYHSSQALNLKQLCILE 486
P L KP G FV ++ T E + R EQL + AN + SSQ ++ Q+ ++
Sbjct: 220 PKLGKPSLGADGKFVVAASIGTREDDKRRLEQLVKAGANAI--VVDSSQGNSIYQIDMI- 276
Query: 487 GKQCWKLYVDILILELGGNL 546
K K+Y ++ + +GGN+
Sbjct: 277 -KYAKKMYPEVDL--IGGNV 293
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 454 ALNLKQLCILEGKQCWKLYVDILILELGGNLFDAVSLAVKAALFNTRI 597
AL L ++CI EG + ++++ + G++ DAV + + L RI
Sbjct: 329 ALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKRI 376
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 160 DDFRSDGRSNIDYRPMELETDVVSHASGSARLQLANTDILVGV 288
++ R+DGR+ RP + + A GSAR +T +L V
Sbjct: 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAV 44
>09_04_0493 -
18046553-18046990,18047061-18047180,18047290-18047478,
18047596-18047739,18048673-18048900,18049659-18049838,
18050304-18050399,18051096-18051262,18051356-18051773,
18052335-18052517,18053846-18053953,18054053-18054246,
18054503-18054662
Length = 874
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = +1
Query: 232 HASGSARLQLANTDILVGVKTEID----VPNLDKPD--QGKIEFFVDCSANATPE 378
H G R Q + DI V TE++ + D P QGK+E CS + PE
Sbjct: 277 HLRGKGRYQRSRLDIPVPALTELEDLKILLGCDLPSSFQGKVEESEKCSTDTQPE 331
>04_03_0821 - 20030123-20030250,20030551-20030815,20030912-20032081
Length = 520
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 226 VSHASGSARLQLANTDILVGVKTEIDVPNLDKPD 327
+S A+ SA LANT+I G+ E +P LD P+
Sbjct: 76 LSGAAISANFTLANTNICKGLIGEEILPELDSPN 109
>03_01_0004 +
41829-42203,42376-42474,42699-42743,43604-43741,
43852-44157,44779-45689,45826-46093
Length = 713
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 222 CCESC*WISKASACKHGYISWC*NRDRC 305
CCESC + KA+ C+ +C ++ RC
Sbjct: 92 CCESCKAMCKANDCRCDSWVFCGDKKRC 119
>06_03_0488 -
21361131-21361226,21361922-21362124,21362252-21362410,
21362694-21362813,21365602-21365801,21366243-21366286
Length = 273
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +1
Query: 223 VVSHASGSARLQLANTDILVGVKTEIDVPNLDKPDQGKIEFFVDCSANATPEFEGRGGEQ 402
++ SG+ + LA I G K +PN PD+ K+ ++ T E R E+
Sbjct: 32 LIEATSGNLGIGLAAVAIQKGYKFIAVIPNSYPPDKQKLIKYLGAEVRIT-EGPYRNMEK 90
Query: 403 LASSIANMMQRAYHSSQALN 462
+ ++ +Y+ Q +N
Sbjct: 91 KVEELKKSIKNSYNLDQMVN 110
>04_01_0319 - 4291144-4293402
Length = 752
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 121 SNTEKTFIVHGVDDDFRSDGRSNIDYRPMELETDVV 228
SNT+ IVH + FR + N+ +R ME+E ++
Sbjct: 237 SNTDDAAIVHAKETLFREENYKNV-FRVMEMELSLM 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,001
Number of Sequences: 37544
Number of extensions: 295755
Number of successful extensions: 658
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -