Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O14
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    31   0.47 
12_02_0216 + 15804110-15804284,15804341-15804351                       30   0.83 
07_03_1160 - 24430240-24431268                                         28   3.3  
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420...    27   4.4  
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022           27   4.4  
03_05_0517 - 25118232-25118730,25119002-25119273                       27   4.4  
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371...    27   5.8  
12_01_0495 - 3935395-3937110                                           27   7.7  
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614...    27   7.7  
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    27   7.7  
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    27   7.7  
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    27   7.7  
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692...    27   7.7  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           27   7.7  

>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 72  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 212
           V+ V    + +PG   +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 41  VYDVTSYVEEHPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 132 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 254
           SG P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 12  SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>07_03_1160 - 24430240-24431268
          Length = 342

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +3

Query: 84  DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPD--PFFSQPSNGPSGNYEPISTGPAFV 257
           D  P  NP Q    + +G P     D   +  PD  P   +PS  P    +PIS GP   
Sbjct: 115 DGPPLPNPNQPPQPNPNGPPKP---DMPPMPKPDGLPNTYEPSR-PDQPPQPISDGPPLP 170

Query: 258 DFNHPNYPPAIRQPLP 305
           + N P  P    QP+P
Sbjct: 171 NPNVPPKPDQPPQPIP 186


>11_01_0532 +
           4201374-4201401,4201475-4202652,4204316-4204670,
           4204791-4204864,4206965-4207056,4207500-4207573,
           4207680-4207822,4207889-4207909
          Length = 654

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 84  DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 248
           DH+ D +   V+  D+S VP D + D  +    DP           + EP+S  P
Sbjct: 40  DHSDDSDSAAVNEDDDSAVPEDAD-DETLAGAEDPVLDLREAEVLPSAEPVSAFP 93


>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
          Length = 587

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/69 (30%), Positives = 24/69 (34%)
 Frame = +3

Query: 96  DYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPN 275
           DY+    H +        G  D     NP   FS PS  P  N  P   G  +    H  
Sbjct: 18  DYHCRTKHSLTAGYARGPGRLDWANQPNPFLRFSPPSQIPLPNPPPGIAGIPYPSLFHSP 77

Query: 276 YPPAIRQPL 302
            PP   QPL
Sbjct: 78  PPPPSPQPL 86


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 183 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYP 281
           D FF++    P GN     T P  VD   P  P
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRP 69


>12_01_1022 -
           10435409-10435564,10435950-10436219,10436820-10437125,
           10437932-10438057,10439825-10439893,10440443-10440487,
           10440717-10440776,10441527-10441589,10442186-10442266,
           10442494-10442916
          Length = 532

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +3

Query: 153 NSDHVVIANPDPFFSQPSNGPSGNYEPIS-TGPAFVDFNHPNYPPAI 290
           N  HV    P P +S     P G Y P    G   V  N P YPP +
Sbjct: 357 NEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLN-PYYPPGV 402


>12_01_0495 - 3935395-3937110
          Length = 571

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 84  DHNPDYNPGQVHVVDNSGVPSDGNSD--HVVIANPDP 188
           DH   Y+    HVVD    P  G  D  HV +A P P
Sbjct: 342 DHYLGYHSHDAHVVDAEATPEQGYHDDAHVAVA-PAP 377


>07_03_0380 +
           17460078-17460782,17461194-17461252,17461388-17461492,
           17461732-17461867,17461919-17461939
          Length = 341

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 75  HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIA 176
           H+V+  P +  G+   V  + VP DG  +H+V++
Sbjct: 282 HIVERKP-FRCGRYPPVVRTAVPVDGRFEHIVLS 314


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/54 (20%), Positives = 24/54 (44%)
 Frame = +3

Query: 78  VVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPIS 239
           ++   P+   G  + + N+G+P   +S      N +P  +  +     N EP++
Sbjct: 340 LIKDEPNTQDGNNNTIQNTGIPIIASSSEFTPMNVEPSIASSNEFTPMNVEPLN 393


>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 87  HNPDYNPGQVHVVDNSGVPSDG---NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 251
           H   Y PG V+   + GVP  G    S  V I  P P     S+ P+  Y+P +  PA
Sbjct: 83  HQGAYQPGGVYRAPSPGVPVIGGYARSTPVTIRAPPP---SHSSAPA-PYQPAAAAPA 136


>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 183 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPAIR-QPLP 305
           +PF  + S G S      S G  +   + P+ PPA    PLP
Sbjct: 298 NPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPLP 339


>03_02_0260 -
           6924532-6924757,6925443-6925546,6925729-6926007,
           6926093-6926368,6926460-6926678,6926758-6926926,
           6927208-6927382,6927489-6927600,6929566-6929820
          Length = 604

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 120 VVDNSGVPSDGNSDHVVIANPDPFFSQP 203
           V++N  +P   N  HVV+ANP P    P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 132 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 242
           SG PS  GN+   + ++P PF  S PS+G SGNY  + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,376
Number of Sequences: 37544
Number of extensions: 265295
Number of successful extensions: 646
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)