Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O13
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   0.49 
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    29   0.70 
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   1.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.7  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   3.7  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   4.9  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   4.9  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.5  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   8.6  

>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect(2) = 0.49
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -2

Query: 392 YSATDSVEVGYISDIWHISGGESLR--CDVVVIVVEEIHFAGSFTCLR----PGMWY 240
           +   + VE+ ++ D+  + G + ++  C  VVI  ++I FA  F C R    P  WY
Sbjct: 148 HMTNEFVEIHHLEDVKAV-GKKLIKAGCKNVVIRCDDIPFASDFFCSRETNMPPTWY 203



 Score = 21.4 bits (43), Expect(2) = 0.49
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 149 LYILCTSKG 123
           LY+LCTS+G
Sbjct: 204 LYVLCTSEG 212


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 601 YSESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 485
           Y ESE+P + S  D    +S         TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 408 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 539
           +KI ASAT    DFI  N+      +N F S DTS++ N  GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 84   LSSTPMYSGAELSPFAGTQNI 146
            +SSTP+Y   E+ PF  T NI
Sbjct: 3563 VSSTPVYHNGEIVPFRFTPNI 3583


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 562 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 398
           DF K   N L           ++  FSF SRE S R +K + +A+   P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 531 FKKFDTPFMKSSWEPNFGFSL 593
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 165 VKDDSAIYSVYQQRDLTQHQSTSELS*ELVRSSD-LELPSCRSQPGITSLE 16
           + DDS++YSV   RD+T+    ++L+   V   D L+ P   S  G+ SL+
Sbjct: 272 ISDDSSLYSVSLARDITE-AIQNKLNFSDVNFGDLLKKPHDFSADGLLSLQ 321


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 598 SESENPKLGSQEDFMK 551
           S+S+NP LGS+ED +K
Sbjct: 371 SDSKNPVLGSEEDTLK 386


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 207 GHSSGSG*FLPIS*VKDDSAIYSVYQQRDLTQHQSTSELS*ELVRSSDLELPSCRSQPG 31
           GH S +   +P   +   S  YS+  QR   +  ST +    ++ S DL  PS +  PG
Sbjct: 400 GHGSVTYHEVPRYNLTSASVGYSISSQRGRIKSSSTIDNLSAILSSEDLRHPSMQPVPG 458


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 447 FINRNDYSLDGKLNLFKSPDTSVD 518
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 375 TVGGGIDYMFKD-KIGASATAAHTDFIN 455
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 233 SHDTTSPVGDR*SCRQSESLPQRXPRHHSEGFRHQKYARYR*CTQLQHCRWRNRLYVQR 409
           SH + SPV  R   R S S   R P   S   R+  Y+R    +  +H R R R Y +R
Sbjct: 139 SHQSRSPVRSRDRDRSSRSSRSRHPSSRSR-HRYDDYSRSPPYSS-RHSRSRRR-YEER 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,282
Number of Sequences: 5004
Number of extensions: 49037
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)