Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O13
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    30   1.7  
04_04_0652 + 26957258-26957354,26957702-26958015                       29   2.2  
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   2.9  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    29   3.8  
12_02_0412 - 18799217-18801061                                         28   5.1  
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197...    28   5.1  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    27   8.9  

>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = -2

Query: 527 GVEIDRGVRTLEEVQLSVQGVIVTIDEVRVSGGR*CTNL-IFEHIVYSATDSV-EVGYIS 354
           GVE+  GV+ LE    +V+ V+ T +  R+       +L +   ++Y A D + E+ Y  
Sbjct: 34  GVELTEGVKKLEFEMRNVEMVLATAEGRRIDKKPLIQSLDVLRELLYDAEDVMDELDYYR 93

Query: 353 DIWHISGGESLRCDVVVIVVEEIHFAGSFTCLRP 252
               I  GE   C        E  +A S T   P
Sbjct: 94  LQQQIEKGEG--CSAAAANYPEASYASSSTPFSP 125


>04_04_0652 + 26957258-26957354,26957702-26958015
          Length = 136

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 319 AVMSWXSLWKRFTLPAASPVSDRG 248
           A  +W S WKRF+  AA+ VSD G
Sbjct: 34  AADAWESGWKRFSSTAAAEVSDDG 57


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 294 HNDXHDITAKAFATRNMPDIANVPNFNTVGGGIDYMFKDKIG 419
           +ND H   A++    N P +A   N N   G ++Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +3

Query: 30  SPAEIGTRAALSPRTARALSSTP--MYSGAELSPFAGTQNI*RYRP*LN**A-ETSLNRW 200
           S  E  + A   PR AR++ S+P   +  A  +P A + +   YRP L+     TS    
Sbjct: 106 SGIEASSAAGYGPRRARSVPSSPDRKFGAAAAAPAAASGSPDVYRPSLSAAGRSTSARSV 165

Query: 201 SGLDNVTPRSSLTIPHPRSETGEAA 275
           SG     P    T+   +SE    A
Sbjct: 166 SGSSRTQPFPKPTLARVKSERATTA 190


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 395 VYSATDSVEVGYISDIWHISGGESLRCDVV 306
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>02_04_0519 +
           23619084-23619198,23619468-23619559,23619655-23619735,
           23620426-23620501,23620674-23620696
          Length = 128

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 364 GTLAISGIFLVAKAFAVMSWXSLWKRFTLPA 272
           G LA+  IF +     ++ W S+W+ FT  A
Sbjct: 63  GLLALGNIFFLTGIGLLLGWQSMWQLFTKKA 93


>02_01_0055 +
           410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 259 SDRGCGIVRLLRGVTLSRPLQRFRLVS 179
           S R C + +   G+T+ +PLQRF+L++
Sbjct: 714 SYRPCPLAQQYIGITVRKPLQRFQLMN 740


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,037,850
Number of Sequences: 37544
Number of extensions: 361980
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)