Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O10
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   115   4e-27
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   1.1  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   1.1  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   2.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.6  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   3.4  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   3.4  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   6.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  115 bits (276), Expect = 4e-27
 Identities = 62/127 (48%), Positives = 81/127 (63%)
 Frame = +1

Query: 1   GFNPSAEEADEGTDSNVETGVDIVLNHRLVETYPFGDKKSYTLYLKDYMKKLVAKLEEKA 180
           G NPSAE+A+E  +   ET  ++V + RL  T  F DKKSY  Y+K YMK + A+L+E  
Sbjct: 46  GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESN 103

Query: 181 PDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKH 360
           P++V +F+ N    +K ILA FKD  F+ GESMD D MV +M YR    T  P+M+FFK 
Sbjct: 104 PERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGIT--PYMIFFKD 161

Query: 361 GLDEEKF 381
           GL  EKF
Sbjct: 162 GLVSEKF 168


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 374 SSSRPCLKNIMNGTSVPLIFLYSIMATMPSQSMD 273
           S+ +  L+ ++NG S+P I ++ I   MPS++ +
Sbjct: 34  SAMKTILRVVINGDSLPSILMHVIRFVMPSRNKE 67


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 61  VDIVLNHRLVETYPFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKT 207
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD V+   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 101  GYVSTSL*FRTMSTPVSTLESVPSSASS 18
            G V+T++ + + STPVST+  +P++  S
Sbjct: 979  GTVATTITYSSSSTPVSTVVVIPTAVCS 1006


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 37   TDSNVETGVDIVLNHRLVETYPFGDKKSYTL 129
            TD  V   +DIVL  RL +  P+G  K   L
Sbjct: 1612 TDGIVSDNLDIVLRRRLSQVAPYGKFKHQIL 1642


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 79  HRLVETYPFGDKKSYTLYLKDYMKKLVAKLEEKAPDQV 192
           H++V   PFG +    LYL+  M+  V +++ +A +++
Sbjct: 470 HKVVYVPPFGTQSPVELYLELLMESTVIQMKFQATEKL 507


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 417 SSFTYAVYAYALELLFIKTMFE 352
           SSF Y ++ YA  LLFI + F+
Sbjct: 317 SSFQYIIFHYAAGLLFINSDFK 338


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 62  TPVSTLESVPSSASSAEG 9
           +P+S+LES+PS +S+  G
Sbjct: 151 SPISSLESLPSRSSTGSG 168


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 348  HHEWYIGTIDISVLHHGDHAI 286
            H +W+ G  + S L+ GDH I
Sbjct: 1826 HEQWHEGLEEASRLYFGDHNI 1846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,666
Number of Sequences: 5004
Number of extensions: 40680
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)