Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O10
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    91   3e-19
03_05_0278 - 22658137-22658352,22658440-22658576,22660230-22660305     29   2.6  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
 Frame = +1

Query: 1   GFNPSAEEA--DEGTDSNVETGVDIVLNHRLVETYPFGDKKSYTLYLKDYMKKLVAKLEE 174
           G NPSAE    DEG D      VDIV   RL E  PF DKK +  ++K Y+K L AKL+ 
Sbjct: 46  GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA 104

Query: 175 KAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFF 354
           +  ++   FK N+    K +L + KDLQFF GESM  DG +    Y+  +G   P  ++F
Sbjct: 105 EKQEE---FKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYF 159

Query: 355 KHGLDEEK 378
            HGL E K
Sbjct: 160 SHGLKEVK 167


>03_05_0278 - 22658137-22658352,22658440-22658576,22660230-22660305
          Length = 142

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 402 AVYAYALELLFIKTMFEEHHEWYIGTIDISV 310
           AVY Y LE  F+ T F  +HE ++   DI +
Sbjct: 17  AVYRYLLESGFVYTAFNFYHESHLDIHDIEI 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,622,308
Number of Sequences: 37544
Number of extensions: 244935
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)