Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O09
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   2.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   7.1  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.1  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   9.4  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 313 PYIHSNIPSYMSSIVVNQITP*PTRCMPKN*TDRLFLTPGQLLRTYK 453
           P +  N PS +SS + N      T C P N    + L PG+ L T+K
Sbjct: 386 PSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNLAPGEKL-TFK 431


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 4   NNINLNAVHSTYLNISQSCS*CISLRVSP 90
           +++ +N +HST L  SQ CS C   R  P
Sbjct: 424 SSLIINPLHSTSLLSSQPCSLCGFNRTQP 452


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 325 SEYKDHDKLNMTTQRELQVNY 263
           S   DHDK+NM  +R L++ +
Sbjct: 203 SSLNDHDKVNMKEKRNLELAF 223


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 223 RATAV-IGQTNSAGSNSPVILVG*SCSACRDPYIHSNIPS 339
           R T V +G   ++ SNS V+L      ACR+ ++  N+P+
Sbjct: 177 RGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFL-GNLPN 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,256
Number of Sequences: 5004
Number of extensions: 42180
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)