Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O09
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0114 + 1423051-1424319                                           27   9.5  
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406...    27   9.5  

>10_01_0114 + 1423051-1424319
          Length = 422

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 233 AVARSS--RDDPVSEIATQ*CRCKEEVPSGLKXXXXXXXXXXXAMSGHE 93
           AVARS    D  + E+     R KEE+P  LK            +SG+E
Sbjct: 299 AVARSGVVADGDMMEVVRTIRRAKEEIPERLKKGDAIAELSKGQLSGYE 347


>05_03_0582 -
           15738503-15739301,15739385-15739642,15740585-15740670,
           15740879-15740960,15741044-15741213,15742081-15742194,
           15742984-15743082,15743171-15743249,15744604-15744710
          Length = 597

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 247 FGL*LRSLGPAGMIPFLRLRPSSAGVRKRFHLDSRQ 140
           FG+ LRS GP   I     +P SAG R+  ++ S +
Sbjct: 531 FGVPLRSAGPQSPINGSTKQPMSAGARRPSYVSSNK 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,767
Number of Sequences: 37544
Number of extensions: 299736
Number of successful extensions: 690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)