Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O09
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     27   6.4  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    27   6.4  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +3

Query: 390 HAKELDRQTVSYPWTAPKDLQGDVVFKVTIVKSYAVFWVGIESVPVKV 533
           HA    + +V   W AP+   G VVF+ +++++  +++   E + VK+
Sbjct: 125 HANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKL 172


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 445 TYKATLCSRSPLSRATPSSGSESNQS 522
           T     C  SP S  +PSSGS+ NQ+
Sbjct: 28  TSSGVSCDVSPNSMTSPSSGSDQNQN 53


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 445 TYKATLCSRSPLSRATPSSGSESNQS 522
           T     C  SP S  +PSSGS+ NQ+
Sbjct: 28  TSSGVSCDVSPNSMTSPSSGSDQNQN 53


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 154 DGTSSLHLHYWVAISET 204
           DG+   HLHYW+  S+T
Sbjct: 49  DGSQGNHLHYWLVESQT 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,270
Number of Sequences: 27780
Number of extensions: 244036
Number of successful extensions: 487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)