Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_O08
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 44 7e-05
11_04_0234 + 15187065-15188241,15188316-15188494 40 0.001
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 2.3
12_02_0292 + 16979550-16980662,16983249-16983731 27 5.3
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 5.3
05_03_0191 - 9521496-9521921 27 5.3
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907... 27 7.0
07_03_1383 + 26172329-26172448,26172770-26172961 27 7.0
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 27 7.0
09_04_0666 + 19318512-19318578,19319185-19319273,19321344-193221... 27 9.2
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 27 9.2
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 43.6 bits (98), Expect = 7e-05
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = +1
Query: 70 DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 240
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 241 GAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGSLYQSSRFNLSYPEI 408
G P K+V+GI GR+W L + + P+ A + GS ++ +SY E+
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGS---NATGAMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 39.5 bits (88), Expect = 0.001
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 52 NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 231
++++ + + + + +D VNI F + N AD AP+Y ++D +A + W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267
Query: 232 IQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVP 330
+ G P KLV+GI GR+W L + D G P
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAP 301
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 194 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 304
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 252 PQTCPWYQHHWTYVEARFR 308
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.5 bits (58), Expect = 5.3
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 16 NMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRD 195
++Q+++S P + F V + N + +V + A +T K+AD + Q R
Sbjct: 570 DLQILLSSGPY--EELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRV 627
Query: 196 PLQNADAA----INYWIQNGAPTHKLVLGI 273
LQNA AA + Y ++ A H + I
Sbjct: 628 LLQNAFAAAFEFVGYLLKRCAELHDVASSI 657
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 240 WCAYPQTCPWYQHHWTYVEARFR 308
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>12_01_0918 +
9072774-9072863,9073385-9073539,9073834-9074213,
9074299-9075273,9076001-9076134
Length = 577
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 253 HKLVLGISTTGRTWKLDSDSEISGVPPIHADE---GGEAGSLYQSSRFNLSYPEILRQN 420
H ++LG + ++ + ++G+P HAD G+ G Y S N + +RQN
Sbjct: 160 HVVILGEWWNATVYDMERMAFLTGIPAPHADAYTINGKPGDFYNCSAPNQTAKFEVRQN 218
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 144 PQRGGLHCTDLRTAEPRSSTKRRR 215
P RGG R A P SS +RRR
Sbjct: 10 PARGGTAAASARAAPPSSSRRRRR 33
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 145 PKEADYTAPIYAPQNRDPLQNADAAI-NYWIQNGAP 249
P+ D + PIY P PL+N A+ N Q AP
Sbjct: 167 PQRPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAP 202
>09_04_0666 +
19318512-19318578,19319185-19319273,19321344-19322171,
19322264-19322419,19322507-19322881
Length = 504
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 281 LDVRGSSIQTVKFPEFHRYTPMRVVKLGPYTKVQGLI 391
+ + G S+Q + PE HR+ ++ VK+ + + LI
Sbjct: 389 VSIFGDSLQLRQMPEHHRHGNLQSVKITGFCSAKSLI 425
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 194 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 304
++Y +PT++ + GF +L LSL+ A ++ G+ +
Sbjct: 281 VMYYSPTIVQMAGFTSNKLALLLSLIVAGMNAAGTIV 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.134 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,915
Number of Sequences: 37544
Number of extensions: 280338
Number of successful extensions: 636
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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